Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g00015 ATGCATATGCATAGATTCAGAGCAAGGGTTTTTCTGCGCTCAATTTCACTTTGTAAATCTAAGTGGCATCAACATCATGGTGCTCAATTTCACTTCTCTCAAAATCGCACCTCCACAACAGGTCCAAAATTTATGGAATTTGCAGCAGAACCATCTATGCAGTTGCAAGTTCTTAAGGCACTCTGCTCGGGTCAGAGAAAGAAGGCTTCAGACTTACTTTTGGATTTTGGTTCCAGAACCCACTCATTAACAGCCGACGATTTTCTTCATATTTTTAAGTTCTGTGCACGCTCTCCTGATCCATTGTTTGTAATGGAGATTTGGAGATTCATGGAGTTAAAAGGTGTTAGCATGAATGATACATGCTCATCTCTTATGATGGAGGCCCTTTGTGAAGGGGGTTACTTGGAGGAGGCCTTTGATATACTGGATTTTCTTGGAGGAAGTCAATGTCTCTATCCAGTTCTCCCACTTTACAATAGTCTCTTAGGATCCTGCTCGAAAATGCAGAGTCTAATTCAAGCAAACAAATGTTTGGACTTAATGGAAAAGAAGATGGTAGGGAAGAGTGAAGTTACATATACTGAGCTTCTCAAGCTTGCAGTTTTGCTGAAAGACTTGCGAGCAGCCCATCTTGTTTGGCAGGAGTATGTGAAAAACTATAGCATGGGTATCATTGCTCTGCGTAGATTCATTTGGTCATTTACAAGGTTAGGAGATTTAGAATCTGCTTGTAAAACTCTGCAACAAATGGTGTCATTAGCGGTCAGGGGAAACATTTCTATTGCTAAAACAGTTTATGGGAAGTTGTATTCTACTAGAATGGACATCCCTGTGCCTTCAAATAAGGGGCTAGGCTTAACCATATCAGACTTTAAGGAGATAAAAAAATTGGACTCTTGTATGAGTGCTGAATTAGATGGGCTGAACGGAGAAGAACACTCACTACTTATGAAGGTGTTGAGGTGGTCCTTTAATGACATAATACACGGATGTGCAAACCAAAAGAATTATATACTTGCAAGGAAACTTATCTTACAGATGGAAAATATCGGTTTGCAGCCATCCTGCCATACATATAATGGCATTATTAAAGCGGTTGCTTCTCATGGAAGTCTTGGGGATGCCATAGAAGTGTTGAAAAAAATGCAGCAGAAGAATTTGAAGCCAAATGATTCAACTTTAGCAACGCTTTCAATCACATGCTGCAGAACACAACAGTTAGATTTAGCTGAGGCTTTTCTGAATCAGATTTCTGAATGTCTATATCCACATCCTTATAATGCTTTACTAGCATCATGCAATGAATTGAATCAACCTGAACGTGCTGTGCAAGTGTTTGCCAAGATGAAGCAGAAAAAAGTTTTGCCTAATATCAGGACTTGTGAGCTTCTATTTTCGTTATTTGGTGTTGTAAATGCCCCTTATGAAGACAGTAATATACTGTCACAGGTGGATGCTGCTAAAAGAATAAATGCTATAGAAAAATATATGGCCACAAATGGCATTCAGCACAGTCATCTTTCAATAAAAAACATAGTTAGAGCCCTTGGAGAAGAAGGGATGATAAGAGAGATGATCCAGTATTTACACGTGGCAGAGAATCTTTTCATTTATAGAAATCCTTCATTGGGAACACATATGTACAACACAGTGTTACATTATCTTGTCAAAGCCAAAGAAAGTGATTTGGCGATTGCAATTTTCAAGAAGATGAAGTTATGTGGCTGCGACCCTGACTCTGAAACATACAATATAATGATTAACTGTTGTACCATCCTAAAAAGTTACAGATCTGCTTGTTTGCTGATTTCAACGATGATACGGAAAGGGTTTTGCCCAGTGATATGTACATATACCGCTATCATTAAGATTTTGTTGGAAGATGAGAACTTTGATGAAGCCCTGAATCTTTTGAAACAAGTCATATTGGATGGCATCCAACCTGATATACTGCTGTACAATACGGTTCTTAAACAAGCATGTTACAAGGGAAGGATTGATGTAATTGAGTTAATTGTGGAGGGTATGCGCCGAGAGAAAGTTCCCCCCGATCCAAGAACATGCGGCTATGTGTTCTCTGCATATGTAGATTCTGGTTTCCACAATACAGCAATTGAAGCATTGCAGGTTTTAAGTTTGCGTATGATGTCTGAAGATGGCAACCTACTTGGAGAGAAGAAAAAAATTGTGAATGAATTCATCATGTCTGAAGATTTGGCTGCTGAGTCACGGATACTCAAGTTATTTGAAGATTCTGAAGATGAACTTGCAGTTGGGTTGTTGAATTTAAGATGGTGTGCCATAGCTGGATTCCCAATCTGCGAGTCAGCTGATCAAAGTCTGTGGGCTAGAAGACTGGAAGGAAAACGATTGTGA 2379 0.3922 MHMHRFRARVFLRSISLCKSKWHQHHGAQFHFSQNRTSTTGPKFMEFAAEPSMQLQVLKALCSGQRKKASDLLLDFGSRTHSLTADDFLHIFKFCARSPDPLFVMEIWRFMELKGVSMNDTCSSLMMEALCEGGYLEEAFDILDFLGGSQCLYPVLPLYNSLLGSCSKMQSLIQANKCLDLMEKKMVGKSEVTYTELLKLAVLLKDLRAAHLVWQEYVKNYSMGIIALRRFIWSFTRLGDLESACKTLQQMVSLAVRGNISIAKTVYGKLYSTRMDIPVPSNKGLGLTISDFKEIKKLDSCMSAELDGLNGEEHSLLMKVLRWSFNDIIHGCANQKNYILARKLILQMENIGLQPSCHTYNGIIKAVASHGSLGDAIEVLKKMQQKNLKPNDSTLATLSITCCRTQQLDLAEAFLNQISECLYPHPYNALLASCNELNQPERAVQVFAKMKQKKVLPNIRTCELLFSLFGVVNAPYEDSNILSQVDAAKRINAIEKYMATNGIQHSHLSIKNIVRALGEEGMIREMIQYLHVAENLFIYRNPSLGTHMYNTVLHYLVKAKESDLAIAIFKKMKLCGCDPDSETYNIMINCCTILKSYRSACLLISTMIRKGFCPVICTYTAIIKILLEDENFDEALNLLKQVILDGIQPDILLYNTVLKQACYKGRIDVIELIVEGMRREKVPPDPRTCGYVFSAYVDSGFHNTAIEALQVLSLRMMSEDGNLLGEKKKIVNEFIMSEDLAAESRILKLFEDSEDELAVGLLNLRWCAIAGFPICESADQSLWARRLEGKRL 792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g00015 792 Gene3D Tetratricopeptide repeat domain 59 277 IPR011990 GO:0005515
Phco2g00015 792 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 545 579 IPR002885 -
Phco2g00015 792 NCBIfam pentatricopeptide repeat 548 581 IPR002885 -
Phco2g00015 792 NCBIfam pentatricopeptide repeat 427 458 IPR002885 -
Phco2g00015 792 NCBIfam pentatricopeptide repeat 617 651 IPR002885 -
Phco2g00015 792 NCBIfam pentatricopeptide repeat 583 614 IPR002885 -
Phco2g00015 792 NCBIfam pentatricopeptide repeat 358 391 IPR002885 -
Phco2g00015 792 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 12 788 - -
Phco2g00015 792 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 580 614 IPR002885 -
Phco2g00015 792 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 650 684 IPR002885 -
Phco2g00015 792 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 615 649 IPR002885 -
Phco2g00015 792 Gene3D Tetratricopeptide repeat domain 319 426 IPR011990 GO:0005515
Phco2g00015 792 Gene3D Tetratricopeptide repeat domain 479 628 IPR011990 GO:0005515
Phco2g00015 792 Gene3D Tetratricopeptide repeat domain 629 736 IPR011990 GO:0005515
Phco2g00015 792 Pfam PPR repeat family 358 404 IPR002885 -
Phco2g00015 792 Pfam PPR repeat family 546 591 IPR002885 -
Phco2g00015 792 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 356 390 IPR002885 -
Phco2g00015 792 Pfam PPR repeat 324 352 IPR002885 -
Phco2g00015 792 Pfam PPR repeat 159 185 IPR002885 -
Phco2g00015 792 Pfam PPR repeat 125 144 IPR002885 -
Phco2g00015 792 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 423 457 IPR002885 -
Phco2g00015 792 Pfam Pentatricopeptide repeat domain 427 470 IPR002885 -
Phco2g00015 792 Pfam Pentatricopeptide repeat domain 604 659 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g00015 Phco-Chr2 169533 180067 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g00015 2 169533 180067 Phco2g00015 2 169533 180067 ECH