Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g00012 ATGAGCTGCTTTTGTTCTGGTACTCGGGGGAAGGATGTGGGCATTGAGAGTTTAGGGTCAAACTCAAAGACAAAGCCGAAGAAAGCGTCTGCAACGAGTTACAGTTTTCGCGAGCTGGCAACGGCGGCGAGGGGTTTTAAGGAAGAGAACTTGATTGGGGAAGGAGGTTTTGGAAAGGTGTACAAGGGTCGTCTCTCAACAGGCCAGCTTGTTGCCATAAAACAATTACGTCTAGATGGTGAAAGTCATCAGGGTAATAGGGAATTTGTGACGGAGGTTCTTATGTTGAGCCTCCTGCACCATTCTAATCTAGTTAAATTGTTTGGCTACTGCACCCATGGGGATCAGAGGCTTTTGGTTTATGAATACATGGCCATGGGAAGCCTGGAACAATATCTCTCAGAGAAAAACCCACTGGGTTGGAGAAATCGACTGAAGATTGGCGTGGGGGCTGCCAGGGGGCTCCAGTATCTACACTGTGTAGCTAATCCTCCTGTTATCTATCGGGACTTGAAATCAGCCAACATCTTGTTAGACAACAATTTGCACCCTAAACTCTCTGACTTTGGGCTGGCAAAGCTAGGACCTGTTGGAGACAATACCCATGTTTCCACCAGAGTCATGGGAACATATGGCTACTGTGCCCCCGAGTATGCCATGAGTGGAAAATTAACTCTTAAATCTGATATATACTGCTTTGGTGTCGTCTTGCTCGAGTTGATCACCGGACGCAAGGCAATGGATGTCACTAGGAAACAACGGGAGCAAAGCTTGGTTGCATGGGCTCGGCCATATCTGAGCGACCGGAGAAAGGTTTCGCAGATTGTTGACCCTCTTTTGGAAGGAAGGTACCCCCTACGTTGTTTGCAGAATGCAATTGCTATCACTGCAATGTGCCTGCAGGAGCAACCCAATCTTCGTCCATCCATAAATGACATTGTTGTTGCATTGGAGTACCTCGCCTCTGAAAGCTCTGAAGTCGTCAGGCACCGTGCACGCACCCCACCACGCCAATCACACTCACAATCCGACACCCAATCCGACACAACAAACTAG 1056 0.4839 MSCFCSGTRGKDVGIESLGSNSKTKPKKASATSYSFRELATAARGFKEENLIGEGGFGKVYKGRLSTGQLVAIKQLRLDGESHQGNREFVTEVLMLSLLHHSNLVKLFGYCTHGDQRLLVYEYMAMGSLEQYLSEKNPLGWRNRLKIGVGAARGLQYLHCVANPPVIYRDLKSANILLDNNLHPKLSDFGLAKLGPVGDNTHVSTRVMGTYGYCAPEYAMSGKLTLKSDIYCFGVVLLELITGRKAMDVTRKQREQSLVAWARPYLSDRRKVSQIVDPLLEGRYPLRCLQNAIAITAMCLQEQPNLRPSINDIVVALEYLASESSEVVRHRARTPPRQSHSQSDTQSDTTN 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g00012 351 ProSitePatterns Serine/Threonine protein kinases active-site signature. 166 178 IPR008271 GO:0004672|GO:0006468
Phco2g00012 351 FunFam Serine/threonine-protein kinase CDL1-like 18 123 - -
Phco2g00012 351 SUPERFAMILY Protein kinase-like (PK-like) 26 318 IPR011009 -
Phco2g00012 351 FunFam Serine/threonine-protein kinase PBS1 124 334 - -
Phco2g00012 351 Gene3D Transferase(Phosphotransferase) domain 1 124 343 - -
Phco2g00012 351 PANTHER OS07G0668900 PROTEIN 24 326 - -
Phco2g00012 351 Gene3D Phosphorylase Kinase; domain 1 14 123 - -
Phco2g00012 351 ProSiteProfiles Protein kinase domain profile. 46 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco2g00012 351 Pfam Protein kinase domain 46 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco2g00012 351 SMART serkin_6 46 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco2g00012 351 CDD STKc_IRAK 52 318 - -
Phco2g00012 351 PIRSF ILK 9 334 - -
Phco2g00012 351 ProSitePatterns Protein kinases ATP-binding region signature. 52 74 IPR017441 GO:0005524
Phco2g00012 351 MobiDBLite consensus disorder prediction 327 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g00012 Phco-Chr2 152840 153986 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Phco2g00012 Pkinase 7.2e-50 CL0016