Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g02044 ATGATTGATAATGAATCAGATAAGTCATCAAAATTGGCATCTTCAAGTTTTTTGCCAGAGACACGAATACTTCAACTTGTACTTGATACTTTACAGAGGAAAGACACTTATGAAATATTTGTTGAACCAGTTGATCCAAATGAGGTTGAAGATTATTATGCTATCATAGAAGAACCTATGGATTTTGGCACCATTAGGGCTAAACTACATGAGAGGATGTACAAGACTCTGGAACAATTTGAGGCTTGTGTTATAAACGAACTAGCTAAGAAAGTTTTTGATATATTAAAGAAGAATCCTAAGAAGTTTGAAATGGAATATTCTGAAATAAGACGAAAAACAGGTCGAAGTAATCAAAGAGATTTCAGGAATTCAAGAAACTCGAAATCCAATGAAATAAGTATTAGCGTGCCTTCAAAAACTATGTCATGTTCATCTCGTAGTACATTAAATAAAAGAAGTTGTAAGACAAATCATCTTGAAGCCAGAAATGTTGAGATTACTACAGGTACTAAAGAGTGTAACAAATGCAAGTCTTTAGAGAGTGATAGGCGTGGCATGTATAAACCATTGCGCTTTGACAAGGACAACTCTATACTGCCAATAATAAATGGTCAACTAAAACTCCTTCAACATGTTGGTCAACAAGATATTGGCTATAAAGATAGCTTGATGTTGTTTGCCAAAGATCTAGGACCTATTGCCCAAAATATAGCTAAAAGGAAAATTCTTGGATGTAAAATTCTCATGACATCTACTTCTGCTCCATACACCTCTTCCATGATATCTTATCATTTGGATCATTTTCATAGTTATCCTAGTGAAATAAGAAGTCCAAGAGAAGAGACTAGTGGAAGAGAAGCAGCCAAAGGGATATTGAATGTTGAAAACAATAAAGGTTGCAATCCTTTAAATGGTAACATTTGGGAATGTCACAAGTGGCCTCTAAGGTGTGATAAAGAGTTCTTAAGCAAGAGATTTTGTTTTGTGGCCTCTAAGTGGCAGTGGCGGCGACGACAAGGCAAGGCAATGGCGTACAGGAGAAGACAAGGAATATCAAGGACTTCCACCTTCAAGGAAGAGATTCCACCTCATGCAGATGCTGAAAATGGCAATGCTCACCCCCTTCCGTCTCTGTCCTCTTCCTTATCCTTCACTCCATCTTCTTCCTCTTCCTCTTCCTCACCCTCCCTCGCTGCTCAGGCCATCAAAGCCTCTGCTGCTCGTCGTGATCCCTCTCTTCACTTTGCTTTCCCCAAATCTGAACATGACCATCACAGATCCAAGAGCTGTGATAACAATTACGTGGTGGCGGATGTTTCGAAATCCGGTGTGTGGGGCGTTCTCGCTCAGAAGGCCAAAGAAATTCTGGAGGATGATAAGTCATCCCCACACCCACACCACAACGCCATCGCCTCCGAAAAACTCAAAACTCACTCTTTCAATACATTTGCTCCTCCTCTCGAGGCTATGGAGAGTAAAGCATCAAGTCCCAGGTCTCCAATCAAGCTAAAAGGAAGTTCTCCGTCCAACTCAAAGTCACATCAAGCTCCAGGGACGTGGAATCCATGGCAGCAACCGGCGCAGACCGGAGACCCTCAAACTATCCATACACAACTCAAGGCATCTCGCGACGTGGCAATGGCAACGGCTGCAAAAGCAAAGTTACTTCTGCGGGAGCTAAAAACAGTGAAAGCAGATTTGGCTTTTTCCAAAGCACGGTGTGGTCAGTTGGAAGAAGAAAACAAAATACTCCGAGACCGCGAGGGTAGCGAGAAGGGAGAAAACATAACCCGTGCAGATGATGATTTGATCCGGCTTCAACTAGAGACACTTCTTGCGGAGAAGGGTCGATTAGCCAGTGAGAATGAGGTATATGCTCGGGAGAATCGTTTTCTACGGGAAATTGTGGAGTACCATCAGTTGAGTATGCAGGACGTGGTGTATCTTGATGAAGGCATGGAAGAAGTTGCAGAACTTTACCCCATTGATACCACTTGCACTACTGCTCCCGGAGTTCCTAGGGTACAGTTGCCCAGGTCACCGCGTTCCCCTTTAAATCGAGGCTCCCAGAAAAAATCAATATTTTCTGTGCCACCGCAGCAGCATCAAGAAGAAGAAGAAGAATACGGAGAAGAAGCAGAAGACAAGAAGATTGCATCAGAATTAGATGAGCATGCAGTTGCAAAGTGA 2193 0.4245 MIDNESDKSSKLASSSFLPETRILQLVLDTLQRKDTYEIFVEPVDPNEVEDYYAIIEEPMDFGTIRAKLHERMYKTLEQFEACVINELAKKVFDILKKNPKKFEMEYSEIRRKTGRSNQRDFRNSRNSKSNEISISVPSKTMSCSSRSTLNKRSCKTNHLEARNVEITTGTKECNKCKSLESDRRGMYKPLRFDKDNSILPIINGQLKLLQHVGQQDIGYKDSLMLFAKDLGPIAQNIAKRKILGCKILMTSTSAPYTSSMISYHLDHFHSYPSEIRSPREETSGREAAKGILNVENNKGCNPLNGNIWECHKWPLRCDKEFLSKRFCFVASKWQWRRRQGKAMAYRRRQGISRTSTFKEEIPPHADAENGNAHPLPSLSSSLSFTPSSSSSSSSPSLAAQAIKASAARRDPSLHFAFPKSEHDHHRSKSCDNNYVVADVSKSGVWGVLAQKAKEILEDDKSSPHPHHNAIASEKLKTHSFNTFAPPLEAMESKASSPRSPIKLKGSSPSNSKSHQAPGTWNPWQQPAQTGDPQTIHTQLKASRDVAMATAAKAKLLLRELKTVKADLAFSKARCGQLEEENKILRDREGSEKGENITRADDDLIRLQLETLLAEKGRLASENEVYARENRFLREIVEYHQLSMQDVVYLDEGMEEVAELYPIDTTCTTAPGVPRVQLPRSPRSPLNRGSQKKSIFSVPPQQHQEEEEEYGEEAEDKKIASELDEHAVAK 730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g02044 730 MobiDBLite consensus disorder prediction 457 477 - -
Phco1g02044 730 MobiDBLite consensus disorder prediction 112 145 - -
Phco1g02044 730 SMART bromo_6 13 112 IPR001487 GO:0005515
Phco1g02044 730 MobiDBLite consensus disorder prediction 671 730 - -
Phco1g02044 730 MobiDBLite consensus disorder prediction 112 127 - -
Phco1g02044 730 ProSiteProfiles Bromodomain profile. 32 80 IPR001487 GO:0005515
Phco1g02044 730 MobiDBLite consensus disorder prediction 457 474 - -
Phco1g02044 730 MobiDBLite consensus disorder prediction 500 534 - -
Phco1g02044 730 MobiDBLite consensus disorder prediction 714 730 - -
Phco1g02044 730 Coils Coil 561 588 - -
Phco1g02044 730 MobiDBLite consensus disorder prediction 374 401 - -
Phco1g02044 730 Gene3D - 15 137 IPR036427 GO:0005515
Phco1g02044 730 PANTHER UNCHARACTERIZED 344 471 - -
Phco1g02044 730 Pfam Bromodomain 27 82 IPR001487 GO:0005515
Phco1g02044 730 SUPERFAMILY Bromodomain 16 83 IPR036427 GO:0005515
Phco1g02044 730 MobiDBLite consensus disorder prediction 355 404 - -
Phco1g02044 730 MobiDBLite consensus disorder prediction 128 145 - -
Phco1g02044 730 MobiDBLite consensus disorder prediction 490 534 - -
Phco1g02044 730 MobiDBLite consensus disorder prediction 683 701 - -
Phco1g02044 730 PRINTS Bromodomain signature 65 83 IPR001487 GO:0005515
Phco1g02044 730 PRINTS Bromodomain signature 49 65 IPR001487 GO:0005515
Phco1g02044 730 PRINTS Bromodomain signature 35 48 IPR001487 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g02044 Phco-Chr1 60168037 60173074 Dispersed/Wgd