Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g02013 ATGTTCCTTTCAGTCACATATTCCTTCACGTTCTTCTTCATTCTCGCATCATCATCACCTTCATACATTGCAACATTAACACCACCACCCACCAAAATATCCATCACAAGCCACAACATTCAAAGCCTCAGCAATGCTGAAAAAGGGGCAAAATTCGCAGGTATATCGCAGTTTAAAAGATATCTACATCGCTTTGGGTACCTACAAAACAACAACAACAGTTTTAACGACGAATTTGATGTCGTGTTGGAATCCGCTCTCATCAGATACCAAGGAAACCTTGGTCTCCAAGTAACAGGGAAGCTCGACTCCAACACGGTTGCTCAAATGATAACACCAAGATGTGGGGATCCAGACACAAACACAAGACCCCAGAACCACGATCACAATCACGTCGACAACGTGCGTTCTTCAAAGAATTTCGTGTTTTTCCCGGGAAAACCACGGTGGTCACGTTCAATGCCAATGACACTCACCTATGCCTTCGCACGTGAGAACATGATCCATAGTTTGAGCATGAAGGAGATAAGAGAGGCATTCCAACGTGCATTCTTAAGATGGGCTTCGGTAATTCCTGTTAGCTTTGTCGAGGTGAGTGACTCTGAAGTTTCGGATTTGAAAATAGGGTTTTACAATGGGGAGCATGGTGATGGTGAGCCCTTTGATGGGGTGCTTGGGGTGTTGGCCCACTCCTTCTCGCCGGAGATCGGCCGCCTCCACCTTGACGAGGCAGAGACATGGGCGGTGGACTTCCAGGCCACGGTGTCGGAGGTGGCGGTGGACTTGGAGTCGGTGGCCACACATGAGATTGGCCACTTGTTAGGGTTGTCTCATAGTTCGGTGAAAGAGGCTGTGATGTATCCAAGTTTGAGGCCTAGAGATAAGAGGGCTAATCTGAACATTGATGACATAAAGGGAGTGCAATCTCTATATGGATCAAACCCTAATTTCAGATCCGAATGGTCACTAGAATCAGATATGTCGGCTAATAAAGATTCCAACTTTGTGAAACCTTTGAGGTTGGCTTCTAGTTTGATAATTATAGTTTCTCTCATGCATAGTTTATGTACATTATAG 1077 0.4559 MFLSVTYSFTFFFILASSSPSYIATLTPPPTKISITSHNIQSLSNAEKGAKFAGISQFKRYLHRFGYLQNNNNSFNDEFDVVLESALIRYQGNLGLQVTGKLDSNTVAQMITPRCGDPDTNTRPQNHDHNHVDNVRSSKNFVFFPGKPRWSRSMPMTLTYAFARENMIHSLSMKEIREAFQRAFLRWASVIPVSFVEVSDSEVSDLKIGFYNGEHGDGEPFDGVLGVLAHSFSPEIGRLHLDEAETWAVDFQATVSEVAVDLESVATHEIGHLLGLSHSSVKEAVMYPSLRPRDKRANLNIDDIKGVQSLYGSNPNFRSEWSLESDMSANKDSNFVKPLRLASSLIIIVSLMHSLCTL 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g02013 358 FunFam Metalloendoproteinase 1 45 317 - -
Phco1g02013 358 SUPERFAMILY PGBD-like 49 120 IPR036365 -
Phco1g02013 358 Gene3D Collagenase (Catalytic Domain) 46 317 IPR024079 GO:0008237
Phco1g02013 358 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 142 315 - -
Phco1g02013 358 CDD ZnMc_MMP 149 312 IPR033739 GO:0008237|GO:0008270
Phco1g02013 358 Pfam Matrixin 150 312 IPR001818 GO:0004222|GO:0006508|GO:0008270|GO:0031012
Phco1g02013 358 Pfam Putative peptidoglycan binding domain 55 110 IPR002477 -
Phco1g02013 358 PRINTS Matrixin signature 204 232 IPR021190 GO:0004222|GO:0006508|GO:0008270
Phco1g02013 358 PRINTS Matrixin signature 299 312 IPR021190 GO:0004222|GO:0006508|GO:0008270
Phco1g02013 358 PRINTS Matrixin signature 180 195 IPR021190 GO:0004222|GO:0006508|GO:0008270
Phco1g02013 358 PRINTS Matrixin signature 265 290 IPR021190 GO:0004222|GO:0006508|GO:0008270
Phco1g02013 358 PRINTS Matrixin signature 110 123 IPR021190 GO:0004222|GO:0006508|GO:0008270
Phco1g02013 358 SMART col_5 146 313 IPR006026 GO:0006508|GO:0008237|GO:0008270
Phco1g02013 358 PANTHER MATRIX METALLOPROTEINASE 39 315 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g02013 Phco-Chr1 59924818 59925894 Transposed