Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g01993 ATGCATGTGAGAAAAATGCACGGGAAAAAGGAGCAAGAAGAGTATATAAGGAAAGGGCCATGGAAAGCAGAAGAAGATGAGGTGCTACTCAACCATGTGAAGAAGTATGGTCCCAGAGATTGGAGCTCCATTCGATCCAAGGGTCTTCTTCAAAGGACTGGCAAATCGTGTCGTCTTCGTTGGGTCAATAAGCTTCGACCAAACCTTAAGAATGGTTGCAAGTTTTCACTTGAGGAAGAGAGGGTTGTGATAGAGTTGCAGGCACAATTCGGGAACAGGTGGGCTAAGATTGCATCCTACTTGGCTGGGAGAACAGACAATGATGTGAAAAATTTCTGGAGCAGTAGGCGGAAGAGGTTGGCCAGGATTCTGCAGACATCAGCAACAACTGCCAAATCACAGAAAAACAAAACAAAAGTTCCTACCCTTCTTGATGTCCCTACTTTGGAGGCTCCAAAGTTCAGTTCATCATCAGAGGGAGAGTCATCATCAAAGCCTCAGTCATACTCACTACCCTTAATTGAGAATTCTGAGGTTATCAAAATGGTATCTTTGCCAGAGCTCATAAAGTCTGAGTTACCTTGTTCTGACCCAATCCACATTGAACAAGAGTTTACCCTTTTTGAGAGCTATAAAATGAGTGAGCAGAATCAACAGATACCCTTTCCTCAGATGCCAGAACTCCAAAATGATCTCACATTCCCAGTGGGAAGCCAAGATGTCTTGGCCAGAATTGATGAGCCATGTTTCATTGAAGACTTTTGTGCTCTTGATGATGTATCTGAGTTTGGAATAGGTCTGCAACACCCCATTAGTTTTCCTTACTTCGAGCCACCAGGAACTTGCAGAATTGAGACAAGGGATACCATTGATAAGTTCAAAAGCAGTGACAGTGACAGCTTCTTCGATGACTTCCCTATGGACATGTTTGATCACGTGGACCCACCTGCAAGCCCTTCAAACCTATGA 969 0.4396 MHVRKMHGKKEQEEYIRKGPWKAEEDEVLLNHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLKNGCKFSLEEERVVIELQAQFGNRWAKIASYLAGRTDNDVKNFWSSRRKRLARILQTSATTAKSQKNKTKVPTLLDVPTLEAPKFSSSSEGESSSKPQSYSLPLIENSEVIKMVSLPELIKSELPCSDPIHIEQEFTLFESYKMSEQNQQIPFPQMPELQNDLTFPVGSQDVLARIDEPCFIEDFCALDDVSEFGIGLQHPISFPYFEPPGTCRIETRDTIDKFKSSDSDSFFDDFPMDMFDHVDPPASPSNL 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g01993 322 CDD SANT 20 65 IPR001005 -
Phco1g01993 322 CDD SANT 74 113 IPR001005 -
Phco1g01993 322 Gene3D - 73 142 - -
Phco1g01993 322 Gene3D - 18 70 - -
Phco1g01993 322 PANTHER TRANSCRIPTION FACTOR DUO1 8 321 - -
Phco1g01993 322 Pfam Myb-like DNA-binding domain 21 80 - -
Phco1g01993 322 SUPERFAMILY Homeodomain-like 16 113 IPR009057 -
Phco1g01993 322 FunFam Transcription factor GAMYB 73 142 - -
Phco1g01993 322 SMART sant 17 67 IPR001005 -
Phco1g01993 322 SMART sant 71 119 IPR001005 -
Phco1g01993 322 ProSiteProfiles Myb-like domain profile. 13 65 IPR001005 -
Phco1g01993 322 ProSiteProfiles Myb-like domain profile. 74 117 IPR001005 -
Phco1g01993 322 FunFam MYB transcription factor 18 70 - -
Phco1g01993 322 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 70 121 IPR017930 -
Phco1g01993 322 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 16 69 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g01993 Phco-Chr1 59629414 59631522 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Phco1g01993 Myb_DNA-bind_6 6.5e-13 CL0123