LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phco1g01981	ATGTCTCTCCACCGCCATGTTTGTAACACCTCAAAGCTATCAAAGATCCCTTGGAAGTACAAGAAGTTCGCCATAGCACAGGGCCAGAAGTCTCTCACTGATTATCTCCACGCCACGCGCTGCATTCCTTACGCCTTCGCTGATCAAATCTCCAAGAACTCCAACACTGCCCTCATCAATCTCATCACCAAGCTCACTTCTTTCTCCCCTCCCCACTATCCCCACAACCTCAACAAGTTCCTCAGGTACAACCCCATCAACGAATTTGAATTCTTCTTTGAGAGCATTGGCATACACCCCTCCAAGTTCCCCTCTTTGTTTCCCCAGAACAAGTTCTTCTTTTCAGAAGATGGGACCCTTTTGGATGCTGCTTGTGTTCTCAGCGAATTTGGGTTTCCCTGGGACAAGCTTGGGGTGCTGTATGCGGAGACTGGGTGTGTGTTCAACTGGGGTGCTTCTGAGTTGAAGGGTAGGCTTTGTGGGTTCAAAAAGTATGGTTTTTGCAATATGCAGGTTGTGGGGATATGCCTGGCTTTCCCCTTTGTGTTTGATGGCCAGAAGGGTGTTGATGTTGAGGCTTTGCTTTGTGATCTGAGGTTGCTGTTTGGGAAGTTTGGTTTGGCTGGGTGTGTTGAAGAGAAGGGGAATGGTGTGGATGATTGGATTGGGGTGTGTAGGAAGATAAGGTTGTTTTATGATTTGAATGGAGGGAAGAACATAGGGGAGTTCATTGGAGGGAACAATGGTGTTGGGGTAGGTGTTATTGTTGAGCATGGGGAAGAGGAGTTGGTTCAAGCAATTGAGTATTTTTGTAGGTTTGGTGCAAAGAAAGAGGACGTGGCACGGTTGATTGTAAATGGACCGGAATTGTTGGAGCTTGAATTGAAGACGGGGATGGTCAATGTGATGAAGCTGTTGAAACACTTTGGAATGAGTTCCAATGGTGTTGATATTGTTAAGAGGGATTCTGCTCATGTGTTGGGGACAGTCAAGATGTGTAATCTGCCAAATGTGATGAGAGCTTTGGGTTTACATGAGTGGTTCTTTGAGAAGATTAAGGATGGGAATCATAGTTTGTTGGTTAGTTTTGTCGCGAACAATCCCAATGTTGTACGAGATAAAGGTTATCTAGATTTTTTGAAGACTATTCAGGTGTCAAGAACTCCAACTCACAATATGAGTAAGTTGAACTTCTTGCATGCCATTGGCTTTGGAGAAAATGCTCTGACCATGAATATTTTCTCTTATATGCACGGAACAAGTGATGAGTTACAAAGAAGATTTGATTGCCTTCTACATCTTGGTATTGAGTTTTCGAAGGTGTGTAAGATGATCACAATTCATCCCAAGATTCTTAGCCAAAACCCTGAAAGTTTGGAGAAAAAGATTAATTTCTTGTGTCAGGAAATGGGACACTCATTGGAGAATTTGGTCACTTTTCCATCATTCTTGTGCTTTGACTTAGAGAATCGCATTAAGCCTAGGCATAGGTTTCATTTGTGGATTATGGAAAAGGGTCTGTCTTCTAAAAGATATTCCATTGCAAGCATGGTTGCAACAAGCAACAGGAATTTTGTTGCCCGTGCTTTTAAAATCCACCCTGCTGCGCCAAAACATTGGTTTGAGCAATTTTATCTCTGA	1641	0.4333	MSLHRHVCNTSKLSKIPWKYKKFAIAQGQKSLTDYLHATRCIPYAFADQISKNSNTALINLITKLTSFSPPHYPHNLNKFLRYNPINEFEFFFESIGIHPSKFPSLFPQNKFFFSEDGTLLDAACVLSEFGFPWDKLGVLYAETGCVFNWGASELKGRLCGFKKYGFCNMQVVGICLAFPFVFDGQKGVDVEALLCDLRLLFGKFGLAGCVEEKGNGVDDWIGVCRKIRLFYDLNGGKNIGEFIGGNNGVGVGVIVEHGEEELVQAIEYFCRFGAKKEDVARLIVNGPELLELELKTGMVNVMKLLKHFGMSSNGVDIVKRDSAHVLGTVKMCNLPNVMRALGLHEWFFEKIKDGNHSLLVSFVANNPNVVRDKGYLDFLKTIQVSRTPTHNMSKLNFLHAIGFGENALTMNIFSYMHGTSDELQRRFDCLLHLGIEFSKVCKMITIHPKILSQNPESLEKKINFLCQEMGHSLENLVTFPSFLCFDLENRIKPRHRFHLWIMEKGLSSKRYSIASMVATSNRNFVARAFKIHPAAPKHWFEQFYL	546

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phco1g01981	546	SMART	mt_12	474	508	IPR003690	GO:0003690\|GO:0006355
	Phco1g01981	546	SMART	mt_12	281	312	IPR003690	GO:0003690\|GO:0006355
	Phco1g01981	546	SMART	mt_12	442	473	IPR003690	GO:0003690\|GO:0006355
	Phco1g01981	546	FunFam	Transcription termination factor MTEF18, mitochondrial	380	540	-	-
	Phco1g01981	546	PANTHER	CGI-12 PROTEIN-RELATED	127	532	IPR003690	GO:0003690\|GO:0006355
	Phco1g01981	546	Pfam	mTERF	421	525	IPR003690	GO:0003690\|GO:0006355
	Phco1g01981	546	Gene3D	Transcription termination factor 3, mitochondrial	257	544	IPR038538	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phco1g01981	Phco-Chr1	59503076	59504716	Dispersed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	mTERF	Phco1g01981		mTERF	9.2e-21	No_clan