Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Phco1g01957 | ATGGGTATAAATAGAGCATTGAATGGACATGTAAAAGTATTTGGAAGGAAAAGGTTAAACTTGATAAACCCTATCTTATCCCCCATTTGTGGAACAACCACCCGTGGTCGCGCCATGGGAATCCTCGCTTTGCCCTTAGTCATCTCTCTTCTCAAACCCCACGCCACCACTCGCCTCCGCCTCTCCCACTCCCTCCTCCTCCGCCGCCATTTCGCCACCACCGTCTCCGCCACCACCACTCCTCATTCTCCTCCACCTTCACCTTCACCTTCTCTCTCACGCCACTCTTCTGCTTCAGCTCACTCCGACGATCGTTCCGTTGACTCCTCAACCCTCACCTTCCAGCAAGCCATTCAGCGCCTTCAGGAATACTGGGCTTCTGTTGGATGTTCCATAATGCAATGTAGCAACACAGAGGTTGGAGCTGGGACTATGAATCCTCTTACATATTTAAGGGTTCTTGGCCCTGAACCATGGAATGTCGCGTACGTGGAACCTAGCATCCGCCCTGATGATAGTCGATACGGAGAAAACCCGAATAGGCTCCAAAGACATACTCAATTTCAGGTGATATTGAAGCCTGATCCTGGAAACTCTCAGGATCTTTTTATCCGCAGCCTCTCTGCTTTAGGTATTGATGTTGCCGCACATGATATACGATTTGTGGAAGATAACTGGGAGAGTCCGGTTCTTGGTGCTTGGGGTTTGGGCTGGGAAATTTGGATGGATGGGATGGAGATTACGCAATTCACCTACTTTCAGCAGGCTGGAAGTCTCCAGTTATCACCTGTATCTGTGGAAATTACTTATGGTCTTGAGCGTATCCTTATGTTACTGCAGGGGGTTGATCACTTCAAGAAGATAAAATATTCCGATGGAATTACATACGGAGAGTTGTTCTTGGAGAATGAGAAGGAAATGAGTGCATATTACTTGGAGCATGCTAGTGTTGATCACGTTCAAAAACATTTTGATTTCTTCGAGGAGGAAGCTCGTAGCTTACTTTCTTCTGGCTTTGCAATCCCTGCGTATGATCAGCTCCTGAAAACATCTCATGCTTTTAATATCTTAGACTCCAGAGGCTTTGTTGGAGTAACAGAGCGAGCTCGCTATTTTGGTCGCATGCGTAGTTTGGCTCGTCAATGTGCTCTACTGTGGTTGAAGACAAGAGAGATGCTTGGCTTTCCCCTTGGTTTTATCTCTGAACCTGATCATTTTGTATTGCCAAAAGGAGTTTTGGAAGCTGCATGTGTGAAGGTGCATGATCATTCAAGAGCATTTGTTCTTGAAATTGGGACTGAAGAGATGCCGCCTCAAGATGTTGTTGATGCCAGTAATCAACTGAAAGATTTAGTGCTGCAACTGCTTGAACGGCGAAGGTTAAACCATGGTGAAGTGCAAGCTTTTGGCACTCCCCGTAGATTAGTGGTTGCTGTTGAAAATCTTTACACAAAACAGGCTGAAAAGGAGGTTGAAGTTCGAGGTCCTCCTGTGTCAAAATCATTTGATCATGAGGGAAATCCCACAAAGGCCATTGAGGGTTTTTGTCGTAGATACTCTGTACCACTGGACCTAGTATACAGAAAGGTCGATGGGAAAACAGAATATGTTTATGCACATGTAAAGGAGTCTTCAAGATATGCTTTGGAGGTCTTGTCTGAAGATTTGCCTGCTACTATTGCTAAAATTTCTTTCCCGAAGACAATGCGTTGGAATTCTCAGGTGATGTTTAGCAGGCCTATCCGTTGGATTTTAGCTCTGCATGGAGATGTAGTTGTCCCATTTACGTTTGCTGGGGTGATAAGTGGAAACATGTCTTGTGGTCTTCGCAGTACTTCTTCAGCAGTTGTCCAGGTGGAAAATGCAGAATCTTATTCAGTTGCAATTAACAATGCGGGAATCAAAGTTTCAGTTGAGGACCGTAAGAAAATTATTCTTGAGCAATCTAATGCATTAGCAAAAGGTGTAAATGGCCAAATTCTTATTCCGAAAGGTTTGCTTGACGAGGTTGTAAATCTTGTTGAGGCTCCTTTTCCTGTGCTTGGAAAGTTTAAAGAGACTTTCTTAGATCTTCCAAAAGATCTTTTAACAATGGTTATGCAAAAGCATCAAAAGTATTTTGCTGTATGTGATGCAAATGGACAATTATTGCCTTATTTCCTTGCTGTTGCAAATGGAGCAATTGATGAGACTACAGTGAGGAAAGGAAATGAAGCTGTGCTCAGGGCTCGCTATGAAGATGCGAAGTTCTTTTACGAGATGGACACCCGTAAAAGGTTTACAGAATTCCGAAAGCAACTGAAAAACATTCTATTTCATGAAAAGCTTGGGACCATGCTTGATAAGATGACTCGTGTTGAAAACATGGTTACTGAACTAAGTTGCATCCTAGATATCAGTGAAGATGTGCAACACATTATCCGTGATGCTGCCTCACTTGCTATGTCTGATCTTTCCACTGCAGTTGTCACTGAATTTACCTCACTTTCGGGAATTATGGGGCGTCACTATGCCCTTAGAGATGGATACTCAGAGCAGATTGCAGAGGCCTTGTTTGAGATCACGCTTCCAAGATTTTCTGGGGACACGCTTCCTGAAAGTGATGCTGGCATAGTTTTGGCAATTGCTGATAGATTGGATAGCCTGGTAGGTTTATTTTCTGCTGGTTGTCAACCTAGTTCCTCAAATGATCCGTTTGGTCTGAGAAGAATCTCATATGGTCTTGTGCAACTATTGGTGGAAAAGAATAAAATTCTAGATTTTAAAAAGGCCCTGGAACTTGCTGCAGAAGTTCAGTCCATTAAAGTAGATCCTCAAGTAATAGATGATGTACTTCAATTTGTCACGCGAAGATTAGAGCAATTTCTGATTGACAAGGGGGTGAATGCAGAATTTGTGCGGTCAATCCTTGTTGAAAGAGCAAATTTTCCCTGTCTTGCAGCAAAATCAGCATATAAAATGGAAGAATTATCAAGAGGGAACCTTTTTCTTAAAGTTGTTGAAGCATACTCCCGGCCAACTAGAATTGTCCGTGGGAAGGAAGATGAGCTTCATACGGAGGTGGATGAGGCTGCTTTTGTGACAAATGAAGAGAGAGTTTTATGGAACACGTTTTTATCTGTTAAAAAGAGTATCAATCCTGGTCTCGAAATAGATGATTTTGTAGAAACTTCATGTCAGTTGATACAGCCACTTGAGGATTTCTTTAATAATGTCTTTGTAATGGTGGACGATGAGAAGATCAGAGTAAACAGGTTAACTTTGCTGAAAGGAATTGCTGATCTGCCCAAAGGAATAGCAGATCTTACTGTTCTACCAGGATTTTAA | 3327 | 0.4286 | MGINRALNGHVKVFGRKRLNLINPILSPICGTTTRGRAMGILALPLVISLLKPHATTRLRLSHSLLLRRHFATTVSATTTPHSPPPSPSPSLSRHSSASAHSDDRSVDSSTLTFQQAIQRLQEYWASVGCSIMQCSNTEVGAGTMNPLTYLRVLGPEPWNVAYVEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQDLFIRSLSALGIDVAAHDIRFVEDNWESPVLGAWGLGWEIWMDGMEITQFTYFQQAGSLQLSPVSVEITYGLERILMLLQGVDHFKKIKYSDGITYGELFLENEKEMSAYYLEHASVDHVQKHFDFFEEEARSLLSSGFAIPAYDQLLKTSHAFNILDSRGFVGVTERARYFGRMRSLARQCALLWLKTREMLGFPLGFISEPDHFVLPKGVLEAACVKVHDHSRAFVLEIGTEEMPPQDVVDASNQLKDLVLQLLERRRLNHGEVQAFGTPRRLVVAVENLYTKQAEKEVEVRGPPVSKSFDHEGNPTKAIEGFCRRYSVPLDLVYRKVDGKTEYVYAHVKESSRYALEVLSEDLPATIAKISFPKTMRWNSQVMFSRPIRWILALHGDVVVPFTFAGVISGNMSCGLRSTSSAVVQVENAESYSVAINNAGIKVSVEDRKKIILEQSNALAKGVNGQILIPKGLLDEVVNLVEAPFPVLGKFKETFLDLPKDLLTMVMQKHQKYFAVCDANGQLLPYFLAVANGAIDETTVRKGNEAVLRARYEDAKFFYEMDTRKRFTEFRKQLKNILFHEKLGTMLDKMTRVENMVTELSCILDISEDVQHIIRDAASLAMSDLSTAVVTEFTSLSGIMGRHYALRDGYSEQIAEALFEITLPRFSGDTLPESDAGIVLAIADRLDSLVGLFSAGCQPSSSNDPFGLRRISYGLVQLLVEKNKILDFKKALELAAEVQSIKVDPQVIDDVLQFVTRRLEQFLIDKGVNAEFVRSILVERANFPCLAAKSAYKMEELSRGNLFLKVVEAYSRPTRIVRGKEDELHTEVDEAAFVTNEERVLWNTFLSVKKSINPGLEIDDFVETSCQLIQPLEDFFNNVFVMVDDEKIRVNRLTLLKGIADLPKGIADLTVLPGF | 1108 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Phco1g01957 | 1108 | NCBIfam | glycine--tRNA ligase subunit alpha | 113 | 397 | IPR002310 | GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 | |
| Phco1g01957 | 1108 | Hamap | Glycine--tRNA ligase beta subunit [glyS]. | 424 | 1105 | IPR015944 | GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 | |
| Phco1g01957 | 1108 | Pfam | Glycyl-tRNA synthetase alpha subunit | 114 | 391 | IPR002310 | GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 | |
| Phco1g01957 | 1108 | MobiDBLite | consensus disorder prediction | 76 | 108 | - | - | |
| Phco1g01957 | 1108 | PANTHER | GLYCYL-TRNA SYNTHETASE | 110 | 1106 | IPR006194 | GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 | |
| Phco1g01957 | 1108 | Gene3D | Bira Bifunctional Protein; Domain 2 | 98 | 315 | IPR045864 | - | |
| Phco1g01957 | 1108 | NCBIfam | glycine--tRNA ligase subunit beta | 427 | 1104 | IPR015944 | GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 | |
| Phco1g01957 | 1108 | PRINTS | Glycyl-tRNA synthetase alpha subunit signature | 352 | 368 | IPR002310 | GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 | |
| Phco1g01957 | 1108 | PRINTS | Glycyl-tRNA synthetase alpha subunit signature | 218 | 242 | IPR002310 | GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 | |
| Phco1g01957 | 1108 | PRINTS | Glycyl-tRNA synthetase alpha subunit signature | 187 | 207 | IPR002310 | GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 | |
| Phco1g01957 | 1108 | PRINTS | Glycyl-tRNA synthetase alpha subunit signature | 166 | 181 | IPR002310 | GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 | |
| Phco1g01957 | 1108 | PRINTS | Glycyl-tRNA synthetase alpha subunit signature | 244 | 264 | IPR002310 | GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 | |
| Phco1g01957 | 1108 | PRINTS | Glycyl-tRNA synthetase alpha subunit signature | 267 | 282 | IPR002310 | GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 | |
| Phco1g01957 | 1108 | FunFam | Glycine--tRNA ligase alpha subunit | 106 | 315 | - | - | |
| Phco1g01957 | 1108 | FunFam | Glycine--tRNA ligase, chloroplastic/mitochondrial 2 | 316 | 395 | - | - | |
| Phco1g01957 | 1108 | SUPERFAMILY | HD-domain/PDEase-like | 755 | 903 | - | - | |
| Phco1g01957 | 1108 | ProSiteProfiles | Heterodimeric glycyl-transfer RNA synthetases family profile. | 778 | 1070 | IPR006194 | GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 | |
| Phco1g01957 | 1108 | Pfam | Glycyl-tRNA synthetase beta subunit | 427 | 970 | IPR015944 | GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 | |
| Phco1g01957 | 1108 | ProSiteProfiles | Heterodimeric glycyl-transfer RNA synthetases family profile. | 113 | 387 | IPR006194 | GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 | |
| Phco1g01957 | 1108 | Hamap | Glycine--tRNA ligase alpha subunit [glyQ]. | 112 | 392 | IPR002310 | GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 | |
| Phco1g01957 | 1108 | MobiDBLite | consensus disorder prediction | 92 | 108 | - | - | |
| Phco1g01957 | 1108 | CDD | GlyRS_alpha_core | 113 | 391 | IPR002310 | GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 | |
| Phco1g01957 | 1108 | Gene3D | Class II aaRS and biotin synthetases; domain 2 | 316 | 395 | - | - | |
| Phco1g01957 | 1108 | SUPERFAMILY | Class II aaRS and biotin synthetases | 113 | 391 | IPR045864 | - |