Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Phco1g01938 | ATGGAAGCGCTAAAACTGTGCACTCTAACATGGAACCCACTGAAGCACTTCTTTCACTCTCACGCATTTCGTCGAACACCTCGAACGCTCGTTTTCCGCGCCTGCTCAACTTCCACCGCCGCCGATACCAGGGCTGCCGGTCGCAATCGCCGGAGCTCGGCGTCGTCGTCCACCACTTCGACTTCCGATAGGGATGCCATTCGAGCCATTCGCTTGAAGAAGGTTGAAGAATTGAGAAGCAAGGGGCTTGATCCATATGCTTATGAATGGGACAAAACTCACGGTGCTAGTCAGCTACAAGATATCTACATAGATTTGGCAAATGGTGAGGAAAAAAATAGCGAGAGTGACCACGTATCTGTTGCGGGAAGAATTGTGGCCAAGAGGGCATTCGGAAAGCTTGCATTTCTCACACTAAGAGATGATTCTGGGTCAATTCAGCTCTATTGTGATAAGGAGAGACTCATAGGCGATCAGTTTGAACAGTTAAAGGCGCATGTTGATATTGGTGATATATTAGGTGCAAGAGGAACAATAAAACGCACAGAAAAAGGAGAACTTTCTGTGTGTGTCCTATCTTTTGCAATCCTTACAAAATCTCTGCTTCCACTGCCTGACAAATATCATGGACTAACCGATACAGATAAACGTTATCGACAGAGGTATGTAGATATGATCGCAAATCCAGAGGTAGCAGATGTAATCCGTAAAAGAGCAAAGGTTGTATCAGAGATACGGAGGACCATGGATTCTTTAGGTTTTGTTGAAGTTGAAACTCCAGTTTTGCAGGGAGCAGCTGGGGGAGCAGAAGCCAGACCTTTTATTACATATCATAATTCTCTTGGAAGAGACTTATATCTGAGAATTGCAACTGAATTACATCTGAAGAGAATGCTGGTGGGTGGTTTTGAAAAAGTATACGAGATTGGTCGAATATTTAGAAATGAAGGAATTTCAACTCGTCATAATCCTGAATTTACAACTATAGAGATGTACGAAGCATACTCGGATTATCAAAGCATGATGAGTTTGGCAGAGGAGATTGTCACTCGATGTGCTCTTGCAGTTCATGGGAAGCTTACAGTTGATTATCAGGGAGTCGAGATATGTCTAGAAAAGCCTTGGAGGAGGGAGACTATGCACAATCTTGTTAAAGAAATTGCTGGGGTTGATTTCAGTGAATTTGGAGATGATCTTGAGGTTGCAAAGCGTGTTACTCAGGATACCCTTGGAAAGAATCTTGATAACAAAGATAAAGGTTCCATTGAAGCATGCCGATCCATTGGCCACCTTCTTAATGAGGTTTTTGAGATTTTTGTAGAACCAAAGCTCATCCAACCTACTTTTGTTCTAGACTATCCAATTGAGATATCTCCACTTGCCAAACCACACAGAAGATCCACAGGTTTGACCGAGAGATTTGAACTTTTCATTTGTGGTCGTGAGTTGGGCAATGCATTCTCCGAATTGACTGATCCTATAGATCAGAGGGAACGCTTGGAAGATCAAATTAGACAGCATGAAAAGAAGAGGTCAGCTGTTTCAGTAAATGATGATAAAAAGGAAGGAAAGGAAGATGAAGATGACTCATATGAAGTAACTCTTGATGATGACTTTCTCACAGCTTTGGAATACGGAATGCCTCCAGCTTCGGGAATGGGACTCGGAATTGATAGGCTCGTGATGCTTTTGACAAATTCTCCCAGTATTCGAGATGTTATCGCCTTCCCAGTACTCAAGCTGCAGCAATAG | 1752 | 0.4298 | MEALKLCTLTWNPLKHFFHSHAFRRTPRTLVFRACSTSTAADTRAAGRNRRSSASSSTTSTSDRDAIRAIRLKKVEELRSKGLDPYAYEWDKTHGASQLQDIYIDLANGEEKNSESDHVSVAGRIVAKRAFGKLAFLTLRDDSGSIQLYCDKERLIGDQFEQLKAHVDIGDILGARGTIKRTEKGELSVCVLSFAILTKSLLPLPDKYHGLTDTDKRYRQRYVDMIANPEVADVIRKRAKVVSEIRRTMDSLGFVEVETPVLQGAAGGAEARPFITYHNSLGRDLYLRIATELHLKRMLVGGFEKVYEIGRIFRNEGISTRHNPEFTTIEMYEAYSDYQSMMSLAEEIVTRCALAVHGKLTVDYQGVEICLEKPWRRETMHNLVKEIAGVDFSEFGDDLEVAKRVTQDTLGKNLDNKDKGSIEACRSIGHLLNEVFEIFVEPKLIQPTFVLDYPIEISPLAKPHRRSTGLTERFELFICGRELGNAFSELTDPIDQRERLEDQIRQHEKKRSAVSVNDDKKEGKEDEDDSYEVTLDDDFLTALEYGMPPASGMGLGIDRLVMLLTNSPSIRDVIAFPVLKLQQ | 583 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Phco1g01938 | 583 | ProSiteProfiles | Aminoacyl-transfer RNA synthetases class-II family profile. | 238 | 577 | IPR006195 | - | |
| Phco1g01938 | 583 | Pfam | tRNA synthetases class II (D, K and N) | 214 | 579 | IPR004364 | GO:0000166|GO:0004812|GO:0005524|GO:0006418 | |
| Phco1g01938 | 583 | SUPERFAMILY | Nucleic acid-binding proteins | 64 | 206 | IPR012340 | - | |
| Phco1g01938 | 583 | Gene3D | - | 57 | 208 | IPR012340 | - | |
| Phco1g01938 | 583 | CDD | LysRS_core | 228 | 580 | IPR018149 | GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 | |
| Phco1g01938 | 583 | Hamap | Lysine--tRNA ligase [lysS]. | 70 | 582 | IPR002313 | GO:0004824|GO:0005524|GO:0006430 | |
| Phco1g01938 | 583 | Pfam | OB-fold nucleic acid binding domain | 119 | 193 | IPR004365 | GO:0003676 | |
| Phco1g01938 | 583 | Gene3D | Bira Bifunctional Protein; Domain 2 | 209 | 583 | IPR045864 | - | |
| Phco1g01938 | 583 | PANTHER | LYSYL-TRNA SYNTHETASE | 46 | 582 | - | - | |
| Phco1g01938 | 583 | FunFam | Lysine--tRNA ligase | 64 | 206 | - | - | |
| Phco1g01938 | 583 | NCBIfam | lysine--tRNA ligase | 69 | 581 | IPR002313 | GO:0004824|GO:0005524|GO:0006430 | |
| Phco1g01938 | 583 | SUPERFAMILY | Class II aaRS and biotin synthetases | 213 | 579 | IPR045864 | - | |
| Phco1g01938 | 583 | Coils | Coil | 497 | 517 | - | - | |
| Phco1g01938 | 583 | CDD | LysRS_N | 118 | 225 | IPR044136 | GO:0000166 | |
| Phco1g01938 | 583 | Coils | Coil | 581 | 583 | - | - | |
| Phco1g01938 | 583 | MobiDBLite | consensus disorder prediction | 43 | 62 | - | - | |
| Phco1g01938 | 583 | MobiDBLite | consensus disorder prediction | 502 | 528 | - | - | |
| Phco1g01938 | 583 | PRINTS | Lysyl-tRNA synthetase signature | 295 | 308 | IPR018149 | GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 | |
| Phco1g01938 | 583 | PRINTS | Lysyl-tRNA synthetase signature | 313 | 330 | IPR018149 | GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 | |
| Phco1g01938 | 583 | PRINTS | Lysyl-tRNA synthetase signature | 266 | 282 | IPR018149 | GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 | |
| Phco1g01938 | 583 | PRINTS | Lysyl-tRNA synthetase signature | 446 | 462 | IPR018149 | GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 | |
| Phco1g01938 | 583 | PRINTS | Lysyl-tRNA synthetase signature | 250 | 260 | IPR018149 | GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 | |
| Phco1g01938 | 583 | FunFam | Lysine--tRNA ligase | 209 | 583 | - | - | |
| Phco1g01938 | 583 | MobiDBLite | consensus disorder prediction | 502 | 531 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Phco1g01938 | Phco-Chr1 | 58993085 | 59004420 | Dispersed |