Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g01909 ATGGCTAAGTTTGTCTCATCTTTCCCAAATTTCATAACCATATATATAAACTACACTACAGTGCACATATCAATGGACAAAATGGATGATGAGTCAGGGCAAAAATTGATTCCAATTTTGGAAAACAATGACTGGCCTATTTTCAGTGATTTTGACATGAACTCTGTTGGAGAAGAACTTAAGGGGGATGATAGTTCAGTGGATCCTGAAGAAGTCTCATGGAAAGAAAGCACAGCTACCCTTCTAAGCAATTTTTTATCTTTGGAAGACAACACTGGCTTTGACATGACAACTCTCACACAACATGCTTCTCCACATAAACCTCAGACTTGTGTTCTGTCATTTGAGGATTCCACTTCTGTCAAGAAAACATGCCAACATCTTGGTGAACAATCAAAGCAGACACAAGAAGAAAAGCCACACAACATCAGAAAACCCCTGAAGAGGGAAAGAACCTCTCCTCAGACATTAGATCACATAATAACTGAGAGAAAAAGGAGAGAGAATATCACCAGAATGTTCATTGCTCTTGCTGCCCTTATTCCTGGCTTGAAAAAGATGGACAAGGTTTCTGTTCTTAGCAATGCTGTAGAGTACGTGAAGTGTCTTCAGCAGCGTGTGAAAGATTTGGAGAAAGAGAAGCAGAAGAGGAAGATAGAATCAGTAGGGTGCTTGAAATTAAGCAAAACCAACATGGTTGCTTATGACCTTTCATGGAGCTCTCATGTTTATGATGGTGAGAAAGCTACCAAAAAATGTTCAAAAGTTGAAGCAAGAGTAGCAGGAAAAGATGTACTAATCAGAGTAACGTGTGAGATGCAAAAGAACATTGTACGAGATGTAATGGCCAAGCTTCAAGCACATAATCTCTCCATACTTAGCTGCAATGTTTTGCCTTTTGGGAATTCTGCTCTAGCCATTACCACCATTGCTGAGATGAACCCTGAATTCACCATGGCAATGGAGGACCTACTGAAAAAGTTGAATGATGATTTGTCCAAGTGCTGTAACCTGCAATATTAA 1023 0.3959 MAKFVSSFPNFITIYINYTTVHISMDKMDDESGQKLIPILENNDWPIFSDFDMNSVGEELKGDDSSVDPEEVSWKESTATLLSNFLSLEDNTGFDMTTLTQHASPHKPQTCVLSFEDSTSVKKTCQHLGEQSKQTQEEKPHNIRKPLKRERTSPQTLDHIITERKRRENITRMFIALAALIPGLKKMDKVSVLSNAVEYVKCLQQRVKDLEKEKQKRKIESVGCLKLSKTNMVAYDLSWSSHVYDGEKATKKCSKVEARVAGKDVLIRVTCEMQKNIVRDVMAKLQAHNLSILSCNVLPFGNSALAITTIAEMNPEFTMAMEDLLKKLNDDLSKCCNLQY 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g01909 340 Coils Coil 193 220 - -
Phco1g01909 340 PANTHER BHLH TRANSCRIPTION FACTOR 48 333 - -
Phco1g01909 340 MobiDBLite consensus disorder prediction 132 153 - -
Phco1g01909 340 Gene3D - 154 223 IPR036638 GO:0046983
Phco1g01909 340 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 154 203 IPR011598 GO:0046983
Phco1g01909 340 MobiDBLite consensus disorder prediction 126 153 - -
Phco1g01909 340 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 156 219 IPR036638 GO:0046983
Phco1g01909 340 SMART finulus 160 209 IPR011598 GO:0046983
Phco1g01909 340 Pfam Helix-loop-helix DNA-binding domain 159 204 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g01909 Phco-Chr1 58759252 58760992 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phco1g01909 HLH 2e-09 No_clan