Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g01908 ATGGATGAAACATGGGAAAAATGGTTTTCTGATTTGGAAATGGATGATGAGTTGCATTTGTTCAATGAACACGACATGAACTCTCTTGAGGAAGAATTGATGAAGGTGGTGAGTTCAGTGCCTCATGATTCAGATTTTGCTAGCAGCAGCAGCAGCAACAACAATGGTTCATGTTTGAAAAGGAACAAACAACATGCGAATTCTAATTGGGAGAAGAACCAAGTATTTTCATCCTGCAATCTCTCTTTTGAGGACTCCACTGTGGTGTCAAATGTTCCTGATAAATCATTCCATGAAAAGCCTGAGAAGGGCAGAAGCTCTTCTCAGTGGGAAGAACACATAATGGCTGAGAGGAAGAGGAGGGAGAAAATCAGCACCATGCTTGTAGAACTTTCAGCCATGGTTCCTGGTTTGAAAAAGTTGGACAAGTTATCTATCATAGGCAAAACTATCGATTATGTGAAGTATCTGCAGAATCGTGTAAAAGATTTGCAGGAAGAACACAGTAAGACAGAATCTGTAAAGTGTTGCAGAAACAACAAATCCAATGATAACATTTCAGAGAACTCTAACAATGGTTTAGATAGACTTTCTTTTCCCAAAGTTGATGCAAGTGTTTCAGGTAAAGATGTAATAATCAGAGTTACTTGTGAGAAACGAGAGCACATTCTTACAAAGTTATTGTCCATGCTTGCATCTCACAATCTCTCCATAGTTTGTAGCAGTGTTCTGCCATTTGGGACTTCTGCCCTAAACATTTCTATCATTGCTAAGGTGCAACATTTGGGCATGGCAATAGATGACCTAGTGAAAAATTTAAATGAGGATTTATTGAAATTCTATATAACTTGCAACCATGATTAA 864 0.3819 MDETWEKWFSDLEMDDELHLFNEHDMNSLEEELMKVVSSVPHDSDFASSSSSNNNGSCLKRNKQHANSNWEKNQVFSSCNLSFEDSTVVSNVPDKSFHEKPEKGRSSSQWEEHIMAERKRREKISTMLVELSAMVPGLKKLDKLSIIGKTIDYVKYLQNRVKDLQEEHSKTESVKCCRNNKSNDNISENSNNGLDRLSFPKVDASVSGKDVIIRVTCEKREHILTKLLSMLASHNLSIVCSSVLPFGTSALNISIIAKVQHLGMAIDDLVKNLNEDLLKFYITCNHD 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g01908 287 Gene3D - 99 173 IPR036638 GO:0046983
Phco1g01908 287 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 108 157 IPR011598 GO:0046983
Phco1g01908 287 Pfam Helix-loop-helix DNA-binding domain 112 158 IPR011598 GO:0046983
Phco1g01908 287 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 105 171 IPR036638 GO:0046983
Phco1g01908 287 PANTHER BHLH TRANSCRIPTION FACTOR 25 279 - -
Phco1g01908 287 SMART finulus 114 163 IPR011598 GO:0046983
Phco1g01908 287 MobiDBLite consensus disorder prediction 92 113 - -
Phco1g01908 287 MobiDBLite consensus disorder prediction 95 113 - -
Phco1g01908 287 Coils Coil 154 174 - -
Phco1g01908 287 MobiDBLite consensus disorder prediction 42 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g01908 Phco-Chr1 58752472 58754796 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phco1g01908 HLH 3.8e-11 No_clan