Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g01901 ATGGAAGAAGATTCATGGGAGAGTTGGATTTCTTCGTTGGAAATGGGTGAGGACAATTTCATTGGTCATTCTCACATCAAATCACTTGATGAAGATAAGTTCTTCAATGGGATTGTACTTGAGCCACTAAATTTCTCATTTCACAACTCTTCTACTAATAATGATAATAATAGTAAGAAAGTTTTTTCCATGGGAAGTAGTTGCTTGTCCTATGAAGATGCAAGCTTTGATGAGAAGCATGGGAAAATGCTGGAGAGTAATAGCTCAAGTTCCATCATTTCTCAAGATGTTGTTGCTAACAATAATGCTTCTTCTTCTTCTTCAGCACCATCCTCATCTTCTTCCTTCATTTTGTCCTTTGAAAACTCAACCATGAAACCTTCTTCTCTCCATCATAGACCTAATGATGATGATGATCGTGGTCATGGTGATTGCCATAGGTATTTTGGTGGGGATGCCCTATGTTCTTCAGTTTTGAGCTCAGAAAGTGAGCATGTCATTACCAAACCAAAGGCCAAACAAGGTGACAACAAGAAGTATAGAAGCTCATCTGAGATTCAAGATCACATCATGACTGAGAGAAAAAGAAGACAGGAACTCACTGAAAGGTTCATAGCACTTTCTGCCACCATACCTGGATTGAAGAAGACAGACAAGGCTTATATACTTAGGGAAGCAATGATATACATGAAACAACTTGAAGAGAGAGTGATTGAGCTAGAAAATCAGAACAAGAGGAAGAACACAGATTCAAGAATATTGATCAAGAAATATTCCCAAGTGAGTTCAAGAGAAGAAGAAACCAAGTCTCACATATCAACTCCTCCACTACCTCAGGTTGAAGCAAGAGTGTTGGAAAAAGAGGTTCTCATTGGAATTCACTGCCACAAACAAAAGGACATTGTGCTCAAAATCATGGCTTTGCTCCAAAATCACCATCTCTCTCTTGCTAGCAGCAGTGTGTTGCCCTTTGGAACCTCCACTCTCAAAGTTACAATCATTGCCCAGATGGAAGAAAAATACTGCATGACAGTGAATAATCTTGTAAAAAGTCTGAGGCAAGCTCTCTTGAAAATCACATGA 1083 0.3897 MEEDSWESWISSLEMGEDNFIGHSHIKSLDEDKFFNGIVLEPLNFSFHNSSTNNDNNSKKVFSMGSSCLSYEDASFDEKHGKMLESNSSSSIISQDVVANNNASSSSSAPSSSSSFILSFENSTMKPSSLHHRPNDDDDRGHGDCHRYFGGDALCSSVLSSESEHVITKPKAKQGDNKKYRSSSEIQDHIMTERKRRQELTERFIALSATIPGLKKTDKAYILREAMIYMKQLEERVIELENQNKRKNTDSRILIKKYSQVSSREEETKSHISTPPLPQVEARVLEKEVLIGIHCHKQKDIVLKIMALLQNHHLSLASSSVLPFGTSTLKVTIIAQMEEKYCMTVNNLVKSLRQALLKIT 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g01901 360 MobiDBLite consensus disorder prediction 130 144 - -
Phco1g01901 360 Pfam Helix-loop-helix DNA-binding domain 188 234 IPR011598 GO:0046983
Phco1g01901 360 Coils Coil 223 250 - -
Phco1g01901 360 Gene3D - 183 255 IPR036638 GO:0046983
Phco1g01901 360 SMART finulus 190 239 IPR011598 GO:0046983
Phco1g01901 360 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 187 261 IPR036638 GO:0046983
Phco1g01901 360 PANTHER BHLH TRANSCRIPTION FACTOR 47 358 - -
Phco1g01901 360 MobiDBLite consensus disorder prediction 125 144 - -
Phco1g01901 360 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 184 233 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g01901 Phco-Chr1 58692833 58696535 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phco1g01901 HLH 1.8e-07 No_clan