Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g01897 ATGTATCAGTGGCGGAAGTTCGAATTCTTCGAGGAAAAGTACGGCGCCAAGTGCTCCGTTCCCGAGGGCGACGACGGAGACGACGTCGTCCGGGAGAAGAAGATCGAGTGCTGCTCCAGCGGTAGGGGCAAAGTCGTTACCGGCTTCGACGACGGCGTCGTTTGCTTCTTCGATCGCGGCTTAAAGTTCAATTACGCTTTCCAACCTCACTCCTCTAGCGTTCTCTTTCTTCAGCAACTCAAGCAACGCAATTTTCTGGTAACGATTGGGGGGGATGAGCAGCTTACTCCCCAGCAATCAGCTTTGTGCCTAAAGGTTTTTGACCTTGACAAGATGCAGCCGGAGAGTTCGAGCACGACGAGTCCTGATTGTGTTGGGATATTGCGAATATTCACTAATCAATTTCCTGAGGCAAAGATTACATCTTTTTTGGTTTTGGAAGAAGTGCCACCTATATTGCTCATAGCTATTGGTTTGGACAATGGTTCTATTTACTGCATCAAAGGAGACATTGCAAGGGAGCGAATCACGCGATTCAGGCTTCAAGTTGAAAACAACCAACCGGACAAAACTCTTTCTGCTGTCACTGGACTTGGGTTTAAGGTGGATGGTCAATCTCTACAGTTATTTGCAGTGACTCCAAGTTCAGTGAGCTTGTTTTCATTGCATAATCAACCGCCGAGAAGGCAAACCCTTGATCAGATTGGATGTGGTGTAAACAGTGTTGCTATGAGTGAACGCTCTGAGTTGATAATTGGTCGACCAGAGGCAGTATATTTTTATGAAATTGATGGGCGTGGTCCTTGTTGGGCTTTTGAGGGAGAGAAGAAATTGCTTGGATGGTTTCGGGGATACCTTTTGTGTGTTATTGCAGATCAAAGAACAGGAAAGCATACTTTCAACATATATGACCTGAAGAATCGATTAATAGCCCACAGTGCATTGGTTAAAGAAGTTTCTCATATGCTTTATGAATGGGGTAACATCATACTCATAATGAATGACAAATCAGCTTTATGTATTGGAGAAAAGGATATGGAAAGCAAGTTGGACATGTTATTCAAGAAAAACCTATATACTGTTGCAATAAATCTTGTACAGACTCAACAAGCAGATGCTGCGGCTACTGCTGAAGTTCTAAGGAAATATGGGGATCATCTATATAGCAAGCAAGACTATGATGAAGCAATGGCCCAGTACATACTTACTATTGGTCACCTTGAACCTTCTTATGTTATACAGAAGTTTTTGGATGCTCAAAGAATCTACAACCTCACAAATTACTTAGAGAAGCTACATGAGAAGGGTCTTGCTTCTAAAGATCACACAACACTTCTATTAAACTGTTACACCAAATTGAAAGATGTTGAAAAGTTAAATTTATTTATTAAAAGTGATGACAGCATTGGGGAACTTAAATTTGACGTGGAAACAGCAATCAGGGTTTGCCGTGCTGCCAATTACCATGAGCATGCAATGTATGTTGCAAAGAAGGCAGGGAGGCATGAATGGTACTTGAAGATCTTGCTTGAAGATCTAGGTAGCTATGAAGAAGCCTTGGAATATATTTCAAGCCTTGAATCAAGTCAGGCAGGGATGACAATAAAGGAGTATGGGAAGATTCTGATTGAGCATAAGCCAGTGGAGACTATTCAGATTCTCATTAGGCTTTGCACAGAAGATGGTGACAGAGGACGCTCAAATGGAGTGTATATGTCTATGTTGCCGTCTCCTGTTGATTTTCTTAGCATTTTCATTCATCATCCTCAGTCCCTTATGGATTTTCTAGAAAAATACACGAATAAGGTTAATGACTCACCTGCTCAAGTTGAGATTCATAATACCCTCTTGGAGTTGTATATATCCAATGAATTGAACTTTCCTTCAATGTCGCAAGTTAATGATGGTGGAAATTACCTTAATGGAGTATCAACAAAAACTATGAGTGCGCAGTCTAATGGAAGCACTGCTGATCAAAAAAGTTCTGCTCATGGAAAGGACCTTCTCGAAAGGCATAAAAAGGGTTTACACTTGCTTAAGAGTGCATGGCCTCCAGAGACAGAACATCCACTATATGATGTTGATTTAGCAATTATACTATGTGAAATGAATGCATTCAAAGATGGGCTTTTGTATATATATGAAAAGATGAAACTCTATAAAGAAGTAATTGCATGCTACATGCAGGCACATGATCATGAGGGGTTAATTGCATGCTGCAAACGGCTGGGGGATTCAGTTAAAGGAGGGGACCCATCTCTTTGGGCCGATGTACTTAAATATTTTGGTGAGCTTGGAGAAGACTGTTCCAAAGAAGTAAAAGAAGTTCTGACTTATATTGAGAGGGATGACATTTTGCCCCCTATAATTGTGCTTCAAACTCTTTCCCGAAATCCATGCCTCACACTTTCTGTGATCAAAGATTACATTGCTCGAAAGCTTGAGCGGGAATCAAAGATGATAGAGGAGGACCGACAAGCTATTGATAAATATCAGGAAGACACACTGTCAATGAGAAAAGAGATTCAAGATCTTAGGACAAATGCTAGAATTTTTCAGCTTAGCAAGTGCACTGCATGCACCTTCACCCTTGATCTCCCTGCTGTGCACTTCATGTGCATGCACTCATTCCACCTGCGCTGCCTTGGCGATAATGAAAAAGAATGCCCTGAGTGTGCTCCTGAATACAGGTCTGTCTTGGAAATGAAAAGAAATTTAGAGCAAAATTCTAAGGATCAGGACAGATTTTTCCACCAGGTGAAAAGCTCTAAAGATGGGTTTTCTGTCATTGCCGAATATTTTGGTAAAGGGATCATCAGCAAAATAAGTAATGGATCCACTTCTGGACCCAGATCCGGAACTGCATCATCCACTAGTGGTTTCTAA 2886 0.4148 MYQWRKFEFFEEKYGAKCSVPEGDDGDDVVREKKIECCSSGRGKVVTGFDDGVVCFFDRGLKFNYAFQPHSSSVLFLQQLKQRNFLVTIGGDEQLTPQQSALCLKVFDLDKMQPESSSTTSPDCVGILRIFTNQFPEAKITSFLVLEEVPPILLIAIGLDNGSIYCIKGDIARERITRFRLQVENNQPDKTLSAVTGLGFKVDGQSLQLFAVTPSSVSLFSLHNQPPRRQTLDQIGCGVNSVAMSERSELIIGRPEAVYFYEIDGRGPCWAFEGEKKLLGWFRGYLLCVIADQRTGKHTFNIYDLKNRLIAHSALVKEVSHMLYEWGNIILIMNDKSALCIGEKDMESKLDMLFKKNLYTVAINLVQTQQADAAATAEVLRKYGDHLYSKQDYDEAMAQYILTIGHLEPSYVIQKFLDAQRIYNLTNYLEKLHEKGLASKDHTTLLLNCYTKLKDVEKLNLFIKSDDSIGELKFDVETAIRVCRAANYHEHAMYVAKKAGRHEWYLKILLEDLGSYEEALEYISSLESSQAGMTIKEYGKILIEHKPVETIQILIRLCTEDGDRGRSNGVYMSMLPSPVDFLSIFIHHPQSLMDFLEKYTNKVNDSPAQVEIHNTLLELYISNELNFPSMSQVNDGGNYLNGVSTKTMSAQSNGSTADQKSSAHGKDLLERHKKGLHLLKSAWPPETEHPLYDVDLAIILCEMNAFKDGLLYIYEKMKLYKEVIACYMQAHDHEGLIACCKRLGDSVKGGDPSLWADVLKYFGELGEDCSKEVKEVLTYIERDDILPPIIVLQTLSRNPCLTLSVIKDYIARKLERESKMIEEDRQAIDKYQEDTLSMRKEIQDLRTNARIFQLSKCTACTFTLDLPAVHFMCMHSFHLRCLGDNEKECPECAPEYRSVLEMKRNLEQNSKDQDRFFHQVKSSKDGFSVIAEYFGKGIISKISNGSTSGPRSGTASSTSGF 961
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g01897 961 ProSiteProfiles Zinc finger RING-type profile. 857 892 IPR001841 -
Phco1g01897 961 FunFam Vacuolar protein sorting-associated protein 11 homolog 350 635 - -
Phco1g01897 961 SUPERFAMILY WD40 repeat-like 37 254 IPR036322 GO:0005515
Phco1g01897 961 Gene3D Tetratricopeptide repeat domain 341 627 IPR011990 GO:0005515
Phco1g01897 961 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 566 771 IPR000547 GO:0006886|GO:0016192
Phco1g01897 961 SUPERFAMILY RING/U-box 829 897 - -
Phco1g01897 961 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 400 551 IPR000547 GO:0006886|GO:0016192
Phco1g01897 961 PIRSF Vps11 1 575 IPR016528 -
Phco1g01897 961 PIRSF Vps11 571 947 IPR016528 -
Phco1g01897 961 Pfam Region in Clathrin and VPS 408 531 IPR000547 GO:0006886|GO:0016192
Phco1g01897 961 Coils Coil 814 848 - -
Phco1g01897 961 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 2 940 - -
Phco1g01897 961 CDD RING-H2_Vps11 855 895 - -
Phco1g01897 961 FunFam Vacuolar protein sorting-associated protein 11 homolog 33 315 - -
Phco1g01897 961 Gene3D - 33 314 IPR015943 GO:0005515
Phco1g01897 961 Pfam Vacuolar protein sorting protein 11 C terminal 897 939 IPR024763 -