Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g01858 ATGCTGACTGCAACACCAAATTTCTTCGTATCTCTTCTCTTAATATCCTCACTCTTTTGCCCAACACTCCTTGCCAAGTCTTCTCACCCAATCTCCGATTCTGAAGTCAGGAAGAACAAGATTCAGTGCTACGCTGATATCGACGGTGGGTTGTGGGGTTGGTCGTGCAAATCATCAGCGATAGCAAGGGAGAATTGTGCTCTGCGATGCCTTTCACCAGCTTGTTATGAGCTCATCTACGAGAGTGACCCGCTTGAAGAGGGAGAAAAAGACTTGATTCGCAGTCAAGAGTACAAATACTGCATGCATAAGTCGTCCTTGGGGGAGAGCCTTGAGGGTGTGAAGGTGAGAAACATAACACAGACAAAAAAAAAGAACAGAGAAATGGCGTTGTTGAGTGGTGGCACGCCATGGTCCAAGCTCGTTGCTCCTCCCATTTTCCACCGCTCTCATGCCCCTCGCACCTTCCTATTCTTCAAACGACGCCGTTTCTCAGTCTCTGCTCTCTCCGAACAGCCACCCGTTCGCGTCCGTTTCGCTCCGTCTCCCACCGGAAACCTCCATGTAGGCGGTGCTCGAACGGCCCTCTTCAACTACTTGTTCGCCAGGTCCAAAGGTGGGAAATTTGTGCTCAGAATTGAGGACACTGACTTGGAGAGGTCCACAAGGGAGTCTGAGGAGGCCATGCTTAAAGATCTCTCTTGGCTTGGACTTGATTGGGATGAAGGGCCTGGTGTTGGAGGGGATTATGGTCCTTACAGGCAGTCTGAGAGGAATTCTTTATACAAACAACATGCGGAGAACCTTCACCAATCTGGTCATGTTTATCGCTGTTTCTGTTCTAATGAGGATCTAGAGAAGATGAAGGAGGATGCTAAACTAAAGCAACTGCCACCAGTGTACACAGGTAAATGGGCCAATGCTAGAGATGAGGAAGTAGAAGAAGAGCTGGCAAAAGGGACTCCTTATACATACCGGTTTCGAGTCCCTAAAGGAAGTTTAAAAATTAATGACCTAATACGGGGCGAAGTTAGTTGGAACTTGGATACACTTGGAGATTTTGTAATAATGAGGAGTAATGGCCAGCCTGTTTATAATTTCTGTGTAACGGTGGATGATGCTACCATGGCAATTTCCCATGTTATCAGGGCAGAGGAGCATTTACCAAACACTCTAAGGCAGGCATTAATATATAAGGCACTAGGATTTCCCATGCCTTACTTTGCACATGTTTCCTTGATTTTAGCTCCTGATCGGAGCAAATTATCAAAACGACATGGAGCAACATCAGTGGGTCAGTTCCGGGAGATGGGATACCAGCCAGAAGCAATGGTGAATTACCTGGCATTATTAGGTTGGGGAGATGGGACTGAAAATGAGTTTTTTACGCTAGATCAACTTGTTGAAAAATTCACTATTGAACGTGTTAATAAAAGTGGTGCTATCTTTGACTCAACGAAGTTAAGGTGGATGAATGGTCAACATTTAAGAGTGCGTCTGTCAGAGGAGTTGACCAAACTTATTGGAGAGTACTGGAAGACATCTGGCATACTCACAGTATCATCTGGGCCCTTTATTGATGAAGCAGTTCAACTACTTAAGGATGGGATTGACTTGATAAATGATGCAGACAAGGCCCTTGCTAACTTACTTTCTTATCCTTTACATTCTACTTTACAGAGCGATGAGGCAGAACCTCTCTTGCAGGATAATCTTTCTGGGTTTGCTGCTAGCCTCTTGGCAGCCTATGATAGTGGTGATCTGGTGGCAGCACTTGAAGAAGGACATGCCGGCTGGCAAAAGTGGGTGAAAGGCTTCGGTAAATCACTTAAGCGAAAGGGAAAATCGCTTTTCATGCCTCTTCGAGTTCTGTTGACTGGAAAAGTGCATGGACCTGACATGGGGGCAAGTGTTGTATTGCTCTATAAAGCTGGAACTAGTGATGTAGTGGCTCCTGAAGCTGGGTTTGTGACACTGGATGAAAGATTCAAAATGCTTAGGCAAATCAACTGGGAGACATTGTCCAACGATCAACCTGTCAAAGAGACTGCTGCTCCTGTCTAA 2064 0.4578 MLTATPNFFVSLLLISSLFCPTLLAKSSHPISDSEVRKNKIQCYADIDGGLWGWSCKSSAIARENCALRCLSPACYELIYESDPLEEGEKDLIRSQEYKYCMHKSSLGESLEGVKVRNITQTKKKNREMALLSGGTPWSKLVAPPIFHRSHAPRTFLFFKRRRFSVSALSEQPPVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLERSTRESEEAMLKDLSWLGLDWDEGPGVGGDYGPYRQSERNSLYKQHAENLHQSGHVYRCFCSNEDLEKMKEDAKLKQLPPVYTGKWANARDEEVEEELAKGTPYTYRFRVPKGSLKINDLIRGEVSWNLDTLGDFVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALGFPMPYFAHVSLILAPDRSKLSKRHGATSVGQFREMGYQPEAMVNYLALLGWGDGTENEFFTLDQLVEKFTIERVNKSGAIFDSTKLRWMNGQHLRVRLSEELTKLIGEYWKTSGILTVSSGPFIDEAVQLLKDGIDLINDADKALANLLSYPLHSTLQSDEAEPLLQDNLSGFAASLLAAYDSGDLVAALEEGHAGWQKWVKGFGKSLKRKGKSLFMPLRVLLTGKVHGPDMGASVVLLYKAGTSDVVAPEAGFVTLDERFKMLRQINWETLSNDQPVKETAAPV 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g01858 687 CDD GluRS_core 175 497 IPR033910 GO:0006424|GO:0008270
Phco1g01858 687 Pfam tRNA synthetases class I (E and Q), catalytic domain 175 490 IPR020058 GO:0004812|GO:0005524|GO:0043039
Phco1g01858 687 SUPERFAMILY Nucleotidylyl transferase 175 483 - -
Phco1g01858 687 SUPERFAMILY An anticodon-binding domain of class I aminoacyl-tRNA synthetases 484 643 IPR008925 GO:0000049
Phco1g01858 687 Gene3D - 556 648 IPR020751 -
Phco1g01858 687 Gene3D HUPs 167 499 IPR014729 -
Phco1g01858 687 PRINTS Glutamyl-tRNA synthetase signature 363 373 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Phco1g01858 687 PRINTS Glutamyl-tRNA synthetase signature 207 220 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Phco1g01858 687 PRINTS Glutamyl-tRNA synthetase signature 379 387 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Phco1g01858 687 PRINTS Glutamyl-tRNA synthetase signature 192 203 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Phco1g01858 687 PRINTS Glutamyl-tRNA synthetase signature 178 190 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Phco1g01858 687 PANTHER GLUTAMATE--TRNA LIGASE 167 667 - -
Phco1g01858 687 Hamap Glutamate--tRNA ligase [gltX]. 174 657 IPR004527 GO:0000166|GO:0004818|GO:0005524|GO:0006424
Phco1g01858 687 FunFam Glutamate--tRNA ligase, mitochondrial 168 499 - -
Phco1g01858 687 NCBIfam glutamate--tRNA ligase 175 643 IPR004527 GO:0000166|GO:0004818|GO:0005524|GO:0006424
Phco1g01858 687 Pfam Anticodon binding domain 509 642 IPR045462 -
Phco1g01858 687 Pfam Domain of unknown function (DUF4787) 33 101 IPR031985 -
Phco1g01858 687 FunFam Glutamate--tRNA ligase chloroplastic/mitochondrial 557 650 - -
Phco1g01858 687 ProSitePatterns Aminoacyl-transfer RNA synthetases class-I signature. 181 192 IPR001412 GO:0000166|GO:0004812|GO:0005524|GO:0006418
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g01858 Phco-Chr1 58174668 58186275 Dispersed