Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g01841 ATGCAAAACCTAATCATTTGTGCTTTGCTTCTTGCTTTTATTTCACCATTTATATGTATTGGGTTCAATGTTACCATTGACGCATATAACGTCATCGATTTTGGTGCTAAGGGAGATGGGAAAACGGACGATTCACAAGCATTTTTAAGAGCATGGGAAAGCACTTGTGGAGCAGAAGGGATGAGAAGTCTAGTCATACCTCAAAACTATAAATTCCTTTTATCGCCCTTAAAGTTTAAGGGTCCTTGCAATGCCTCAAGTATTCAAATTCAGATTAGAGGAAAAATAGTTGCACCTGCGAAGAATGAATGGGTATCTTATTATTTTACTTGGATCTTGATGACAAATGTGAATGGTCTCATAGTTGATGGAAGTGAAGGATTAATAGATGGCTTGGGTTCTACTTGGTGGCCATGCAAACCTTGTCAACGACCATCGGTCATCACTTTCAATGCATGCAATGATCTCAGGGTTAGTAACTTGAGAATTGTGAACAGTCCAAGATCTCACATAAACGTCAATGATTGTGTCAATGCCATATTCTCTGCTATCAGTATTCATTCTCCTGTTAACAGTCCCAACACTGATGGATTTAATGTCTATGCTTCCAAAAATATCTGGATCAGAGATTCAACTATAGCATCTGGTGATGATTGTATTGGCATCAGTGGTAACTCCTCTTATGTCAATGTTACTGGGATTGCTTGTGGACCAGGCCATGGAATAAGCATTGGCAGCTTGGGTAAAGGCAGTGATAATACAGCAGAACAAATTTATGTACAAAACTGCAACTTCACTGGCACAACAAATGGAGCAAGAATCAAGACATTTCCTAATGGATCAGGTTATGCAAGAGGAATCACTTTTGAGCAAATTAAATTGATAAAAGCTAGGAACCCAATAATCATTGACCAATTCTATGATGATTATTCTCCAACGGATAAAGGTGTAGAAGTGAGTGGAATCACATTCCGTGGATTTGATGGAACATGTGTGCATGATGAAGCAATTACCTTAAATTGTGGTCCACAAGGTTGTTTCAACATTACATTGGATCAAATTAAGATTGTCTCTTATGAACAAGGAAAGCAAGTTTATTGTTCTGGGAAGAATGCCCATGGAACAGTTACATCTACCACTCCAAACTGTTCTTGCTTATCGCCATGA 1167 0.3839 MQNLIICALLLAFISPFICIGFNVTIDAYNVIDFGAKGDGKTDDSQAFLRAWESTCGAEGMRSLVIPQNYKFLLSPLKFKGPCNASSIQIQIRGKIVAPAKNEWVSYYFTWILMTNVNGLIVDGSEGLIDGLGSTWWPCKPCQRPSVITFNACNDLRVSNLRIVNSPRSHINVNDCVNAIFSAISIHSPVNSPNTDGFNVYASKNIWIRDSTIASGDDCIGISGNSSYVNVTGIACGPGHGISIGSLGKGSDNTAEQIYVQNCNFTGTTNGARIKTFPNGSGYARGITFEQIKLIKARNPIIIDQFYDDYSPTDKGVEVSGITFRGFDGTCVHDEAITLNCGPQGCFNITLDQIKIVSYEQGKQVYCSGKNAHGTVTSTTPNCSCLSP 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g01841 388 SUPERFAMILY Pectin lyase-like 24 386 IPR011050 -
Phco1g01841 388 PANTHER - 28 368 - -
Phco1g01841 388 SMART pbh1 226 246 IPR006626 -
Phco1g01841 388 SMART pbh1 314 336 IPR006626 -
Phco1g01841 388 SMART pbh1 255 276 IPR006626 -
Phco1g01841 388 SMART pbh1 284 305 IPR006626 -
Phco1g01841 388 SMART pbh1 203 224 IPR006626 -
Phco1g01841 388 SMART pbh1 153 188 IPR006626 -
Phco1g01841 388 Pfam Glycosyl hydrolases family 28 56 368 IPR000743 GO:0004650|GO:0005975
Phco1g01841 388 ProSitePatterns Polygalacturonase active site. 233 246 IPR000743 GO:0004650|GO:0005975
Phco1g01841 388 Gene3D - 24 386 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g01841 Phco-Chr1 58014283 58019060 Proximal