Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g01830 ATGGTTCTGCATAGCTGGATTTTGAGTTACAATGTTGTTAGTTTCTTGTTGCTGATTAGTTGTGGCATGACCTATGGGACTGAGACTGATATCTTCTGCTTGAGAAGTATCAAAGAGGCCCTTGAAGACCCCAATAACTATTTGAAGTTTTCTTGGGATTTCAACAACAGAACTGATGGGTTCATCTGTAAGTTTATTGGGGTTGAGTGTTGGCACCCTGATGAGAACAAGGTCTTGAATCTCAGACTGTCCAATATGGGACTCAAAGGCCAGTTTCCTCGTGCCATTCAAAATTGCTCTAGCTTAACTGGGTTAGACCTTTCAATTAACAAACTCTCTGGAACCATTCCGGAAGATATATGTTCTCTTGTACCATTTGTGACGACTCTTGATCTTTCTTCAAATGAATTTTCTGGGGCGATTCCTGTGAATCTTTCAAATTGTACCTTTCTCAATAGCCTGAAACTTGATCAGAACAGACTCATTGGTCAGATTCCTCTACAACTTGGTATTCTCCCACGGATCAAGACGTTTTCTGTATCCAACAATCTTTTGACTGGGCAAGTTCCAAGCTTTGCCCACTCAGTGTCGGTAAGTTATTTAAATAATCCAGGCCTATGTGGAGGTAATGGATTGCGCCCTTGCCAAACCAAGGATTCTAAGAGTAACATGGCTGTTATTGCTGGAGCTGCCGCCGGTGGGGTGACTCTTGCGGCTTTAGGATTGGCTGTTGGAATGTTCTTCTTTGTTCGACGTGTTTCTTTCAAGAAGGAAGAGGACCCCGAAGGAAACAAATGGGCAAGAAGTCTAAAAGGAACTAAACAAATTAAGGTTTCTATGTTTGAGAAATCAATCTCAAAAATGAAGTTGGTTGATCTCATGAAGGCTACTAACAACTTCAGTAATACCAATATCATTGGGTCAGGAAGAACAGGAACTGTTTACAAAGCTGTCCTTGGTGATGGCACAACACTTATGGTTAAGAGATTACAGGAATCTCAGTCTACTGAAAAGGAATTCATGTCTGAGATGGGTACACTAGGGATTGTCAAACATCGCAACCTTGTTCCCCTTTTAGGCTTTTGCATGGCCAAAAAGGAGAGGCTTTTGGTCTATAAAAACATGCCAAATGGCAATCTCCATGACCAACTCCATCCTGCCGATGGTGTGAGCACCCTTGACTGGACTACAAGACTCAAAATTGCAGTTGGAGCAGCCAAAGGGTTAGCATGGCTTCATCATAGCTGCAATCCCCGTATTCTCCACCGAAACATAAGCTCAAAGTGCATCTTGTTGGACGCAGATTTTGAGCCAAAAATTTCTGATTTCGGCCTTGCCAGACTGATGAACCCAATTGATACCCATTTGAGTACTTTTGTAAATGGGGAGTTTGGTGATTTGGGTTATGTTGCTCCTGAGTACACAAGAACTTTGGTTGCCACACCCAAGGGGGAAGTTTATAGCTTTGGGACTGTTCTTCTTGAGTTGGTGACTGGTGAAAGACCTACCAATGTGACTAAAGCACAAGAAACTTTTAAAGGAAATCTGGTAGAATGGATTACGGAGCTAACAAACAATGCAAAACTCCATGATGCCATTGATGAATCATTAGTCAACAAGGATGTTGACAGTGAGCTTTTCCAATTTCTCAAGGTTGCATGCAACTGTGTTCTGCCAAATCCAAAGGAGAGGCCAACCATGTTTGAAGTGTATCAGTTTTTAAGAGCTATTGGGGCTAGATACAATTTCACAGCTGATGATGAGATCTTGGTACCTACTGATAATGGTGATGCTGATAACATGGATGAACTTATTGTAGCTCGAGAATGA 1830 0.4191 MVLHSWILSYNVVSFLLLISCGMTYGTETDIFCLRSIKEALEDPNNYLKFSWDFNNRTDGFICKFIGVECWHPDENKVLNLRLSNMGLKGQFPRAIQNCSSLTGLDLSINKLSGTIPEDICSLVPFVTTLDLSSNEFSGAIPVNLSNCTFLNSLKLDQNRLIGQIPLQLGILPRIKTFSVSNNLLTGQVPSFAHSVSVSYLNNPGLCGGNGLRPCQTKDSKSNMAVIAGAAAGGVTLAALGLAVGMFFFVRRVSFKKEEDPEGNKWARSLKGTKQIKVSMFEKSISKMKLVDLMKATNNFSNTNIIGSGRTGTVYKAVLGDGTTLMVKRLQESQSTEKEFMSEMGTLGIVKHRNLVPLLGFCMAKKERLLVYKNMPNGNLHDQLHPADGVSTLDWTTRLKIAVGAAKGLAWLHHSCNPRILHRNISSKCILLDADFEPKISDFGLARLMNPIDTHLSTFVNGEFGDLGYVAPEYTRTLVATPKGEVYSFGTVLLELVTGERPTNVTKAQETFKGNLVEWITELTNNAKLHDAIDESLVNKDVDSELFQFLKVACNCVLPNPKERPTMFEVYQFLRAIGARYNFTADDEILVPTDNGDADNMDELIVARE 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g01830 609 SUPERFAMILY L domain-like 28 197 - -
Phco1g01830 609 Gene3D Phosphorylase Kinase; domain 1 261 373 - -
Phco1g01830 609 FunFam Inactive LRR receptor-like serine/threonine-protein kinase BIR2 375 595 - -
Phco1g01830 609 FunFam Inactive LRR receptor-like serine/threonine-protein kinase BIR2 261 374 - -
Phco1g01830 609 Pfam Protein kinase domain 302 572 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco1g01830 609 ProSiteProfiles Protein kinase domain profile. 300 574 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco1g01830 609 SUPERFAMILY Protein kinase-like (PK-like) 277 574 IPR011009 -
Phco1g01830 609 Gene3D Ribonuclease Inhibitor 28 217 IPR032675 -
Phco1g01830 609 Gene3D Transferase(Phosphotransferase) domain 1 375 591 - -
Phco1g01830 609 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 47 193 - -
Phco1g01830 609 FunFam Nuclear pore complex protein NUP107 27 191 - -
Phco1g01830 609 CDD STKc_IRAK 306 574 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g01830 Phco-Chr1 57909821 57912101 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xa Phco1g01830 Pkinase 5.5e-37 CL0016