Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g01825 ATGGAACATGAGCAGAAAACCATCACCACCAAGCTCGTGAAATCCAAATTCTTCTTCCCCAAAGTTGTTCGCATTTCAGCAACGGATCACAACGCCACAGACTCCTCTAGCGAAGAAGAAGACGAAGAAGGGAGGCTTCTTCACCTTCACAGAGTTAAAAAAGTGGTTAATGAGATAAGAATTGTGCATGCAGACAAAACAAAAGGACACAACAACAACAACAACAACAATAGTTGTTGTTGTTGTTCAACCAAATACAACGAAAGTATGGAACAACAACACCACCACCAACAACAAAGACTGAATATTAAAGGGCACAAGTTTCGCGGCGTGCGACAACGGCCCTGGGGACGTTGGGCCGCCGAGATAAGAGACCCTTTCCGGCAAAAGCGAGTGTGGCTTGGAACCTTCGACACCGCGGAAGAAGCTGCTATGGTTTACGACAGAGCTGCTATAAGCTTCAGAGGGGCTGATGCTGTCACTAATTTCATCAAACCGCCGCTAAAAGACAGTGAAAGTGTTGTTAAACGGACTAGTTGTTGCGCATGTGCCTCACCCACTTCCGTTCTCTTGTTCCAGCCTTGGATGGAACCTTTGTCTTCGGAAGAAACCTTCAAAGAAGAAGTGTTTGATGGGTTAAAAGATGAAGTTGATAGTTTCTTGTTTTCTGATCATGCTCTTTATGATCAACCTCTTCCTACTATGTTTTCTGACGTTGATGTTTCGTTGGATGAGGATCTTGAATCATGTAAATGGGATGTAGATAGTTATTTCACTGATGATGCTTTTCATTAA 795 0.4352 MEHEQKTITTKLVKSKFFFPKVVRISATDHNATDSSSEEEDEEGRLLHLHRVKKVVNEIRIVHADKTKGHNNNNNNNSCCCCSTKYNESMEQQHHHQQQRLNIKGHKFRGVRQRPWGRWAAEIRDPFRQKRVWLGTFDTAEEAAMVYDRAAISFRGADAVTNFIKPPLKDSESVVKRTSCCACASPTSVLLFQPWMEPLSSEETFKEEVFDGLKDEVDSFLFSDHALYDQPLPTMFSDVDVSLDEDLESCKWDVDSYFTDDAFH 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g01825 264 PRINTS Ethylene responsive element binding protein signature 130 146 IPR001471 GO:0003700|GO:0006355
Phco1g01825 264 PRINTS Ethylene responsive element binding protein signature 108 119 IPR001471 GO:0003700|GO:0006355
Phco1g01825 264 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 20 194 - -
Phco1g01825 264 SUPERFAMILY DNA-binding domain 107 163 IPR016177 GO:0003677
Phco1g01825 264 CDD AP2 107 163 IPR001471 GO:0003700|GO:0006355
Phco1g01825 264 FunFam Ethylene-responsive transcription factor 2 106 165 - -
Phco1g01825 264 SMART rav1_2 107 171 IPR001471 GO:0003700|GO:0006355
Phco1g01825 264 Pfam AP2 domain 107 156 IPR001471 GO:0003700|GO:0006355
Phco1g01825 264 Gene3D AP2/ERF domain 106 165 IPR036955 GO:0003700|GO:0006355
Phco1g01825 264 ProSiteProfiles AP2/ERF domain profile. 107 164 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g01825 Phco-Chr1 57887191 57887985 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Phco1g01825 AP2 3.7e-15 CL0081