Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g01823 ATGAAGGGTGGAGCCAAGAAAAAGGCCACCGCGGATGTTCCGACCGAGGTGCTTGAGCCTTCTGGGGCTGCGGATTCGGGAGGTGGAGAAGGTGGGAGTGGGCAAGTTCAAAGCTTTGAGGAGAACGAGGGTACCCAGTTGCGGAACGCTGAGGATGAGGAACCTCAGGTGGAGGATTCTGAAGGGGAGGGCGAGGAAGGAGAAGGGGAGGGGGAAGAAGAGTATGGTGTGGAGGGAGATGAAGAAGAGGAAAATGTTGGTGGTACTTTTCCAGGGGCTCAAGGTGTTATTCTTGCTGAGAATTTTTATGAAGTTGAAGCTATACGTCGTAAGAGGGTGCGTAAGGGTCAGGTGCAATACTTTATCAAATGGAATGGGTGGCCTGAGACAGCCAACACTTGGGAGCCACCAGAAAATCTAGTTTCTGTTCCTGATGTTGTTGAAGCTTTTGAGGAGAGCTTGAAGTCAGGAAGACATCGTAAGCGCAAACGCAAGCATGTGGTGCATCATACTCAACCCAGGAAGAGGCTGGAGCGTTCTACCACTCCATACAGCCTTCGACGCTTTTCGACTAGTACGGTTGGGAACCATACACAGTCTGCTCTTCCTGTTCTTAGTGATGCAAGCCTTCCTGTTATTCCTGCCTTTCCTCAGACTGTTCTTTTTGCTGACGAATTGGGAAATGTTGCTGGCAGCAATCTTGAAAATGCCACACCTGTTAATGTTACCAAGTCTGCAATTGGTTCAGAACAAAATATTGAAAGGAATGAGGAAAATGATTACGATCCTAAGCTTAGTGAGCTTAAAGCTTCCTCTGCCTGTGGGAATGACGCAGACAGGCTTGCAATACGAATTCCAGAAGCAATTCCTTCTGGTCCTGGGTTTGCTGGCAATAATGGTCAAACAGTTGCTAAATCAAAGGGGGTTCGCATGGAAATAAGTGAAAGTGGCCGCTGTCGGGGAGCCAAAAGGAGAAAATCTGGTTCTGTAAGGAGGTTCAACAAAGAATTATATGCTGGTGAGCCTGCCAATACACAAAATCCTGTTGGAGTAGCTGTTAGTACAGCTGAGTCAGCACTACTAACAAGGAATGCTGGTATTGGTGCTAATCATGCCAGACCTGCTAGCAATATCGTAAAGATTATAAAGCCAATAGGCTATTCAGCTACCGTATCCAGTGGAACACAGGATGTTTTGGTAACTTTTGTGGCTTCAAAGTCTGATGGAACAGAAGTGATGGTCAACAACAAGTATCTAAAAGCATTTAATCCACTTCTTCTCATCAATTTCTATGAGCAGCATCTTCGCTACAGCCCTACATCTTGA 1326 0.4661 MKGGAKKKATADVPTEVLEPSGAADSGGGEGGSGQVQSFEENEGTQLRNAEDEEPQVEDSEGEGEEGEGEGEEEYGVEGDEEEENVGGTFPGAQGVILAENFYEVEAIRRKRVRKGQVQYFIKWNGWPETANTWEPPENLVSVPDVVEAFEESLKSGRHRKRKRKHVVHHTQPRKRLERSTTPYSLRRFSTSTVGNHTQSALPVLSDASLPVIPAFPQTVLFADELGNVAGSNLENATPVNVTKSAIGSEQNIERNEENDYDPKLSELKASSACGNDADRLAIRIPEAIPSGPGFAGNNGQTVAKSKGVRMEISESGRCRGAKRRKSGSVRRFNKELYAGEPANTQNPVGVAVSTAESALLTRNAGIGANHARPASNIVKIIKPIGYSATVSSGTQDVLVTFVASKSDGTEVMVNNKYLKAFNPLLLINFYEQHLRYSPTS 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g01823 441 SMART chromo_7 102 155 IPR000953 -
Phco1g01823 441 PANTHER CHROMO DOMAIN-CONTAINING PROTEIN LHP1 1 440 IPR044251 GO:0006325|GO:0031507
Phco1g01823 441 PRINTS Chromodomain signature 113 127 IPR017984 -
Phco1g01823 441 PRINTS Chromodomain signature 100 108 IPR017984 -
Phco1g01823 441 PRINTS Chromodomain signature 128 140 IPR017984 -
Phco1g01823 441 MobiDBLite consensus disorder prediction 154 180 - -
Phco1g01823 441 ProSiteProfiles Chromo and chromo shadow domain profile. 103 162 IPR000953 -
Phco1g01823 441 SMART ChS_2 367 440 IPR008251 GO:0005634
Phco1g01823 441 MobiDBLite consensus disorder prediction 54 85 - -
Phco1g01823 441 SUPERFAMILY Chromo domain-like 95 158 IPR016197 -
Phco1g01823 441 MobiDBLite consensus disorder prediction 306 326 - -
Phco1g01823 441 Gene3D - 97 158 - -
Phco1g01823 441 MobiDBLite consensus disorder prediction 157 173 - -
Phco1g01823 441 CDD CD_CSD 103 152 - -
Phco1g01823 441 MobiDBLite consensus disorder prediction 1 92 - -
Phco1g01823 441 ProSitePatterns Chromo domain signature. 120 140 IPR023779 -
Phco1g01823 441 Pfam Chromo (CHRromatin Organisation MOdifier) domain 103 152 IPR023780 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g01823 Phco-Chr1 57835475 57845843 Dispersed