Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g01805 ATGGTGGATTTGGAAGCTGTGGCAGAAACAGTTGAAAATTGTACTGATAAAATATCAGCAGCATTTGAAGACAGTTCTATTGGGGAGCCAAATGTTGGTATGGAGTTTGATTCAGAGAAAGCTGCCAAGAACTTTTATGACGAGTATGCAAGGCAGGAAGGGTTTGTTGTGCGCCTTGATCGCTGCCATCGTTCTGAGGTTGACAACCGAATCATTTCGCGCCGTTTTTCATGCAATAAGCAAGGTTTTCATGTGAGGGTTAGAAATAAAACCAAACCTGTTCATAAACCAAGGACTAGCATAAGAGAAGGTTGTGAAGCCATGATGTTGGTTAAAGTTAATAAATGTGGGAAGTGGGTGGTTACAAAATTTGTGAAGGAGCACAGTCATCTGCTAAATGCTTCTGGTTCTCCTTCGTATAGTAAAATGATTGAGTCAAAGGATAGGATAATTCAACAACTCACAAAGGAACTTGAGTACCGAGATCGATTATGTCAGCAATATCGCAGACAACTATTCTCCCTTCTGGAGACTGTTGAGGAACAAACAGAAAGTTTATCAAAAAATGTGGAGCTTGTTGTTAACAATATAAAAAATCTTTAG 603 0.393 MVDLEAVAETVENCTDKISAAFEDSSIGEPNVGMEFDSEKAAKNFYDEYARQEGFVVRLDRCHRSEVDNRIISRRFSCNKQGFHVRVRNKTKPVHKPRTSIREGCEAMMLVKVNKCGKWVVTKFVKEHSHLLNASGSPSYSKMIESKDRIIQQLTKELEYRDRLCQQYRRQLFSLLETVEEQTESLSKNVELVVNNIKNL 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g01805 200 Coils Coil 176 196 - -
Phco1g01805 200 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 10 196 - -
Phco1g01805 200 Pfam FAR1 DNA-binding domain 44 133 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g01805 Phco-Chr1 57563387 57565808 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Phco1g01805 FAR1 7.5e-26 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g01782 3 40816040 40820730 Phco1g01805 1 57563387 57565808 PCT