Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g01798 ATGTCTTCAACTCTGTTTGCCTTTCTTCTTTGCTCCATGGTGCTGCTACACATCTTTGTTGTAGCTCAAACCCGAAGCAACAAAATCATTGATCACTCTCTTCTTAAAGAAACTAGCAAAGTCTCATGGGTAGTTTCATCTTCTGGTGAGATAAACCAAACCAGAAGAAACATAACAGTTGGTGATTCTCTTTTTGCGGAAACAACTAGCAACAACAACTTCTCAGCGTGGGTGGTTTCACCTCTTGGTCACTTTGCCTTTGGGTTTCTTCCACTTGAGGACTCTAATCATTTCCTACTTTCCATTTGGTATGCTAAGATTCCTGACAAGACTGTTGTTTGGTATGCCAATGGAGACACTCCAGCTCCAAAGGGGTCAAAGGTTGAACTCATCGATGATGATGGGTTAGTCCTCACTGCCCCAAATGGTGAACAGTTATGGAAAACTAACAGCCCTGATGGTAAAGTTCAGCAAGGTTTCTTAAAGGACAATGGAAACTTTGTGCTTCTGGATGAAAATCATCATGGTGTGTGGGAGACTTTTAAGCATCCAAAGGACACCTTGTTGCCCTCACAAACTCTTGAAAAAGGTGAGAGGCTTTCATCAAGATTTCTAGAGTCAAATTACTCTGAAGGAAGGTTTGAGATGCTTCTTCAAATGGATGGCATTCTTTCCATTCATGCTTTAAACTCGCCCTCTGCATATGCCAATGAAAACTACTATGAAAGTAGGACTGAAGAGTCCAACACATCAAGTCCTGGAACTCGGTTGGTGTTTGGACCATTAGGGTATGTATATGTTTTGAGGAAGAACAATGAGAAATACAACTTGTCAACATGGAGTGGAGCCTCTACTAATGAATCTTACTTCAGAGCAACTCTTAATTTTGATGGGGTGTTTACACTCTATCAACATTCAAAGAGTTCGCTTGGGAGTGATGGTTGGAGTGCTATTTGGTCTCAGCCAGATAACATCTGTCTCAGTAGGCTTGCTACTGAAGGTAGTGGTGTTTGCGGGTTCAATAGTGTCTGCACATTGGGAAGTAATCAAAGGCCAAGTTGCCAATGCCCAAAATGGTACTCTTTAGTTGATCCTAATGACCCCTATGGTAGCTGCAAGCCAGATTTCATACAAGGATGTGCAGAAGATGAGCTCATTGGAAAAGAAGATATAGCTGAATATGATTTTGAGGTGTTGATAAATACAGATTGGCCACTTTCAGATTATGTGCTTCTTAAGCCCTTTACTGAGGAACAATGTAAACAGTCATGTTTGGAAGATTGTATGTGTGCAGTTACCATCTACAAATCAGGTAATGATTGCTTCAAGAAGAAGTTGCCTCTTTCAAATGGTAGAGTTGATGTTGGACTTAATGGTGCAAAGACTTTCATCAAAGTGAGGAAAGATAATTCCTCTTTGCTTGTTCCACAAGCCAAAGTGAATGAGAATAGTAAGAGCTCTTTGAGTTTGGTTGCTTGGATACTTTTTGGAAGCTCTTCATTTCTCAATGTCATGTTTATTGCAGCCTTATGCATGAGCTTTTTCTTCATTTTTCATTACAAGAAGAAGCATAGAGGAATTGGCAAAAGTGACAATGCCCTTGAAACTAACTTGCGTTGCTTCGGTTATGAGGAGCTTGAAAGAGCTACAAATGATTTCAAAAAAGAGTTAGGAAGAGGGTCTGTTGGTGTTGTTTATGAAGGAGTCATAAACATAGGCTCAGCAATTCCAATAGCAGTGAAAAAATTGAACACTTTGCTTTTCCAACAGGTTGAGATGGAGTTCAAGAATGAGTTGCATGCCATTGGTCTCACTCATCACAAGAACTTGGTGCGGTTGATAGGCTATTGTGAGGCTGAAAAAGAAAGATTGCTGGTTTATGAGTACATGAGCAATGGCACTTTGGCAAGTCTTATTTTCAATAAGGTGAAGCCTGGCTGGAAACTAAGGTTAGAGATTGCATTTGGGGTTGCTAGAGGACTTGCATATTTGCATGAAGAGTGCATCACCCAGATTATCCACTGTGACATAAAGCCACAAAACATACTCCTTGATGAGTACCATAATGCCAGAATTTCTGACTTTGGATTGGCCAAGCTCTTGAAGATGAACCAAAGCAGAACCAACACTGCCATAAGGGGAACAAAGGGGTATGTGGCACTTGAATGGTTTAAAAACATGGCTATCACAGCCAAAGTGGATGTCTATAGTTATGGTGTGTTGCTGCTTGAGATCATTTGCAGCAGAAGAAATGTAGAAATGGATCTAGAGGAGGAAGAGAAGGTTATATTAACTGATTGGGCTTGTGATTGCTACTCAAGAGGCACTTTTGATCCCTTGGTTAAAGATGACAAGGAGGCATTGGATGACAAAAGGAACATGAAGAAGTTGGTGATGATCTCCATTTGGTGTATCCAAGAGGATCCAAGTCTTAGACCAACCATGAGAAAAGTGACACAGATGCTTGAAGGTGTTGTAGAAGTGCAACCTCCACCCTTCCCCTCACAATTTAGCAGACATTCTCAAAATCCCTGA 2535 0.4087 MSSTLFAFLLCSMVLLHIFVVAQTRSNKIIDHSLLKETSKVSWVVSSSGEINQTRRNITVGDSLFAETTSNNNFSAWVVSPLGHFAFGFLPLEDSNHFLLSIWYAKIPDKTVVWYANGDTPAPKGSKVELIDDDGLVLTAPNGEQLWKTNSPDGKVQQGFLKDNGNFVLLDENHHGVWETFKHPKDTLLPSQTLEKGERLSSRFLESNYSEGRFEMLLQMDGILSIHALNSPSAYANENYYESRTEESNTSSPGTRLVFGPLGYVYVLRKNNEKYNLSTWSGASTNESYFRATLNFDGVFTLYQHSKSSLGSDGWSAIWSQPDNICLSRLATEGSGVCGFNSVCTLGSNQRPSCQCPKWYSLVDPNDPYGSCKPDFIQGCAEDELIGKEDIAEYDFEVLINTDWPLSDYVLLKPFTEEQCKQSCLEDCMCAVTIYKSGNDCFKKKLPLSNGRVDVGLNGAKTFIKVRKDNSSLLVPQAKVNENSKSSLSLVAWILFGSSSFLNVMFIAALCMSFFFIFHYKKKHRGIGKSDNALETNLRCFGYEELERATNDFKKELGRGSVGVVYEGVINIGSAIPIAVKKLNTLLFQQVEMEFKNELHAIGLTHHKNLVRLIGYCEAEKERLLVYEYMSNGTLASLIFNKVKPGWKLRLEIAFGVARGLAYLHEECITQIIHCDIKPQNILLDEYHNARISDFGLAKLLKMNQSRTNTAIRGTKGYVALEWFKNMAITAKVDVYSYGVLLLEIICSRRNVEMDLEEEEKVILTDWACDCYSRGTFDPLVKDDKEALDDKRNMKKLVMISIWCIQEDPSLRPTMRKVTQMLEGVVEVQPPPFPSQFSRHSQNP 844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g01798 844 SUPERFAMILY alpha-D-mannose-specific plant lectins 111 237 IPR036426 -
Phco1g01798 844 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 69 833 - -
Phco1g01798 844 SMART serkin_6 551 822 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco1g01798 844 SMART blect_4 55 184 IPR001480 -
Phco1g01798 844 SUPERFAMILY Protein kinase-like (PK-like) 538 837 IPR011009 -
Phco1g01798 844 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 630 830 - -
Phco1g01798 844 FunFam Serine/threonine-protein kinase 185 329 - -
Phco1g01798 844 CDD B_lectin 79 184 IPR001480 -
Phco1g01798 844 PIRSF SRK 8 844 IPR024171 GO:0004674
Phco1g01798 844 Pfam Protein kinase domain 554 820 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco1g01798 844 Gene3D Phosphorylase Kinase; domain 1 526 629 - -
Phco1g01798 844 ProSiteProfiles Bulb-type lectin domain profile. 61 182 IPR001480 -
Phco1g01798 844 ProSitePatterns Serine/Threonine protein kinases active-site signature. 672 684 IPR008271 GO:0004672|GO:0006468
Phco1g01798 844 ProSiteProfiles Protein kinase domain profile. 551 826 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco1g01798 844 Pfam D-mannose binding lectin 111 196 IPR001480 -
Phco1g01798 844 Gene3D - 57 183 IPR036426 -
Phco1g01798 844 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase LECRK1 52 182 - -
Phco1g01798 844 FunFam S-receptor-like serine/threonine-protein kinase 520 629 - -
Phco1g01798 844 Gene3D Transferase(Phosphotransferase) domain 1 630 833 - -
Phco1g01798 844 Gene3D - 185 324 IPR036426 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g01798 Phco-Chr1 57495361 57497895 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Phco1g01798 Pkinase 7.9e-47 CL0016