Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g01797 ATGGCTTCTTCCCCTTTGCTTCCCTTTCTCTTCCTCTCAATCATTCTGTTACCCTTTCAGCTCATCACTGTTGCAGCCCAAACCAAAACCAACTTAGCTATTGGTGATTCTTATACTGCAGGAAAAAGCACAACCCCATGGTTGGTTTCATCTCCTTCTGGTGACTTTGCTTTTGGTTTCCTCCCACTTGAGGACTCTCCTGATCATTTCATACTTTGCATTTGGTATGCCAAGATTCAAGGCAACACCATAGTTTGGTTTGCCAATAGGGAAAAGCCTGCACCAAAGGACTCAAAGGTGGAGCTTACTGCTAATGATGGGTTGGTGCTCACTGCCCCAAATGGTGACCGGTTATGGAATACTGGAACCAGTGTTAGAGTTTCTAGGGGTTTGTTTAATGACACTGGAAACTTTGTGCTTCAGGATGGTGACTCCAACAGTGCTTGGGAGAGTTTCACGGATTATAGAAACACCTTGCTGCCCTATCAGACTATGCAAAGGGGCCAAAAGCTTTCTTCTATGCTTAGGGAGAATGATTTCAACAAGGGCAGGTTTGATCTATTTTTCCAAAATGATGGTAATCTTGTGATGCACTCTTTGAATTTACCATCTGGGTATTCTAATGAAAACTACTATGAAACTGGAACCATCGAGTCCAACACGTCTAGTGCTGGGACACAATTGGTGTTTGATAGCTCAGGAGATATGTATATTTTGAGAGCGAACAGTGAAAGGTTTAATTTGTCAGAAGAGGGTGTTGGAGTTTCCACCACTCAATTTTACCTTAGAGCAACTCTTGATTTTTATGGGGTGTTCACACTCTATCAACATCCTAAGGGTTCTTCTGGCAGTGGAGGTTGGACCCCAGTGTGGTCTCATCCAAATAATATCTGTAAGAATTATCTTGCTGCTGCAAGTAGTGGTGTTTGTGGATATAATAGCATATGCAGTTTAAGAGATGATAAGAGACCAACTTGCCAGTGTCCCAAATGGTACTCCTTGGCTGACCCTAGTGATCCCTATGGTAGCTGCAAACCAGATTTTGTACAAGAATGTTTTGAAGGTAATCTTAGTAAAAGAAAGGGTCTATATGAGTTTGAGGTGTTGACAGATACTGATTGGCCTCTTTCAGATTATGAGCTTCAAAGACCATTTAGTGAAGACCAATGCAAACAATCTTGTATGGAAGATTGTATGTGTTCTGTTGCCATTTTCAGGCTAGGTGACAGCTGCTGGAAGAAGAAGTTGCCACTTTCAAATGGAAGAGTTGATGCCACACTTAATGGTGCAAAGGCCTTCATGAAAGTGAGGAAGGACAACTCCTCCTTGATTAGTCCTCTAATCACTGTGAAGAACAATAGGAATACTTTGATTTTGGTTCTGTCAGTGCTTCTCGGTAGTTCCGCTTTTCTCAATCTCATATTGGTTTTTGCAATCTGCTTGAGCACCTCCTATGTTTTTCAGTACAAGAAGAGGCTTAGAAGACATGGCAAAAGTGACACTACTGTGGGAACCAACTTGCGTTGCTTCACTTATGAGGAACTTGAAGAGGCCACTGATGGCTTTGACAAAGTGCTAGGGAAGGGAGCTTTTGGCGTTGTGTATGAAGGCGTCGTCAACATAGGTTCCGTTACTCGTGTGGCGGTGAAAAGATTGAACACTTTTCTCTTGGAAGAGGTTCAGAAGGAATTCAAGAATGAACTGAATGTCATTGGCCTCACACACCACAAGAACTTGGTTCGTTTACTTGGATTTTGTGAGACTGAATCAGAAAGGTTACTTGTTTATGAGTACATGGGCAATGGCACTTTAGCAAGTCTTCTTTTCAATGTCGAGAAACCAAATTGGAAACTGAGGCTACAAATTGCATCTGGGGTTGCTAGAGGACTTCTATATTTGCATGAAGAGTGCATCACACAGATCATCCACTGTGACATAAAGCCTCAGAACATACTCCTTGATGATTACTATGTTGCAAGAATTTCAGACTTTGGATTGGCCAAGCTTTTGAACATGAATCAGAGCAGAACCAACACTGCAATAAGGGGAACAAAAGGGTATGTTGCACTTGAATGGTTCAAAAACATGCCAATCACGGCTAAAGTGGATGTCTATAGTTATGGGATGGTGTTGCTTGAGATAGTTTCATGCAGAAAAAGTGTAGAATTTGATGCAGAAGATGAATCCAAAGCAATCCTAAGTGAATGGGCTTATGACTGCTACTCTGAAGGTGCTCTTCATAGCTTGGTTGAGGGTGATAAGGAGGCATTGGATGACATGAAGACAGTGGAGAAGTTGGTGATGATTGCCCTTTGGTGTGTGCAAGAGGATCCTGGTTTTAGACCAACCATGAGAAATGTGACACAGATGCTTGAAGGTGTTGTTGAAGTGGAGGTGCCACCATGCCCCTCACAAGTTAGTATTCAATATTCCCTAAACTAA 2442 0.4222 MASSPLLPFLFLSIILLPFQLITVAAQTKTNLAIGDSYTAGKSTTPWLVSSPSGDFAFGFLPLEDSPDHFILCIWYAKIQGNTIVWFANREKPAPKDSKVELTANDGLVLTAPNGDRLWNTGTSVRVSRGLFNDTGNFVLQDGDSNSAWESFTDYRNTLLPYQTMQRGQKLSSMLRENDFNKGRFDLFFQNDGNLVMHSLNLPSGYSNENYYETGTIESNTSSAGTQLVFDSSGDMYILRANSERFNLSEEGVGVSTTQFYLRATLDFYGVFTLYQHPKGSSGSGGWTPVWSHPNNICKNYLAAASSGVCGYNSICSLRDDKRPTCQCPKWYSLADPSDPYGSCKPDFVQECFEGNLSKRKGLYEFEVLTDTDWPLSDYELQRPFSEDQCKQSCMEDCMCSVAIFRLGDSCWKKKLPLSNGRVDATLNGAKAFMKVRKDNSSLISPLITVKNNRNTLILVLSVLLGSSAFLNLILVFAICLSTSYVFQYKKRLRRHGKSDTTVGTNLRCFTYEELEEATDGFDKVLGKGAFGVVYEGVVNIGSVTRVAVKRLNTFLLEEVQKEFKNELNVIGLTHHKNLVRLLGFCETESERLLVYEYMGNGTLASLLFNVEKPNWKLRLQIASGVARGLLYLHEECITQIIHCDIKPQNILLDDYYVARISDFGLAKLLNMNQSRTNTAIRGTKGYVALEWFKNMPITAKVDVYSYGMVLLEIVSCRKSVEFDAEDESKAILSEWAYDCYSEGALHSLVEGDKEALDDMKTVEKLVMIALWCVQEDPGFRPTMRNVTQMLEGVVEVEVPPCPSQVSIQYSLN 813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g01797 813 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase LECRK1 26 153 - -
Phco1g01797 813 SMART blect_4 37 155 IPR001480 -
Phco1g01797 813 PIRSF SRK 1 812 IPR024171 GO:0004674
Phco1g01797 813 ProSiteProfiles Bulb-type lectin domain profile. 35 153 IPR001480 -
Phco1g01797 813 FunFam S-receptor-like serine/threonine-protein kinase 489 598 - -
Phco1g01797 813 Pfam Protein tyrosine and serine/threonine kinase 522 791 IPR001245 GO:0004672|GO:0006468
Phco1g01797 813 Gene3D - 24 154 IPR036426 -
Phco1g01797 813 ProSiteProfiles Protein kinase domain profile. 520 795 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco1g01797 813 Pfam D-mannose binding lectin 83 168 IPR001480 -
Phco1g01797 813 ProSitePatterns Serine/Threonine protein kinases active-site signature. 641 653 IPR008271 GO:0004672|GO:0006468
Phco1g01797 813 CDD B_lectin 48 153 IPR001480 -
Phco1g01797 813 Gene3D Phosphorylase Kinase; domain 1 494 598 - -
Phco1g01797 813 Gene3D - 155 282 IPR036426 -
Phco1g01797 813 FunFam Serine/threonine-protein kinase 156 301 - -
Phco1g01797 813 ProSitePatterns Protein kinases ATP-binding region signature. 526 550 IPR017441 GO:0005524
Phco1g01797 813 SUPERFAMILY alpha-D-mannose-specific plant lectins 70 216 IPR036426 -
Phco1g01797 813 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 599 799 - -
Phco1g01797 813 SUPERFAMILY Protein kinase-like (PK-like) 501 792 IPR011009 -
Phco1g01797 813 SMART serkin_6 520 791 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco1g01797 813 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 39 803 - -
Phco1g01797 813 Gene3D Transferase(Phosphotransferase) domain 1 599 799 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g01797 Phco-Chr1 57474492 57476933 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Phco1g01797 PK_Tyr_Ser-Thr 1.4e-45 CL0016