Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g01732 ATGCTTTGGTTTCTCGCAACTGGGTCAAATATTTCTCTTCCTTTTCCACACACAGCAGTTATAAAAGCTCTGCGAGTGTTCACTTCCACCACCTGTTCGAGCATTTGCGTCACCCAAACCAAGGTTGAAGTTGAAGATGATAAAAGCAAATGGAGTGATGCTACTGAACTTTTGAGAAAATGGGGTTGCAGTGATGATGATTTGGTGAGAATATTCTCGCGCTGTCCCTCGTTGCGCAATGCTGATCCCACGCAGGTCCAATCTAAACTGTGCCTGCTTAGTGGTTTGGGCTTGCGTGCTTCTGAACTTGTGAAGATTGTCAATTGTAGACCAAGGTTTTTCCGGTCTCGGATTAACTCTTATTTAGAAGAGAGGATTGGACATCTTACATCATTGTTTGAGTCCAGGGAAGTGCTTCAGAAGGCCATTGTAAGGAATCCTTCACTTCTGCTATCGGATGGTCGCTATAATGTTAAGGCCACAGTTGAGCTCTATGAGAAGATGGGTGTTAAGAAAGGGGACTTGATTCAGATGCTGCTTTTGCGGCCCACGGTTATTTCAAGGACTTCCTTTGATGCTGAGAAGCTGGAATATTTAAGCAGGACTGGGCTTACTGTGGATTCAAAGATGTATAAATATGTGGTGACTTTAATTGGAATCTCTCGCGTGGAAACCATCCGGGAGAAGGTGGCGAATTTCGAAAAGTTTGGGTTTTCTGAAGAGGAGATATTTGGTCTTGTGGGGAGGTCTCCTAATGTTTTGACATTGTCGACAGACAAGGTTCAGAGGAACATGACTTTCATTTTGGGCACGATGAAGCTTGATGCTAAGATGGTTCTAAAGCAGCCGTATCTATTGTATGCCAATGTGGATACTGTTTTGAAGCCAAGAGTTCTACTAGCACTGAAGATTCAAGATATGGATTCAAAGTGGCGGATCATAGGACCAACGATAGTTAGTGTACTTAGGATGCAAGAGACGAGATTTTTGGACTTGTTTGTCAAATGCCATGGGGAGGATGTTGCCAATGAATTGATGGATTTCTATAAAAGGACAAAAGGGGTTAAGAGATTAGGAGAGTCATCAAAGAAGTGCAGTAGGAGAGGATTCCCTTTCTGA 1119 0.4316 MLWFLATGSNISLPFPHTAVIKALRVFTSTTCSSICVTQTKVEVEDDKSKWSDATELLRKWGCSDDDLVRIFSRCPSLRNADPTQVQSKLCLLSGLGLRASELVKIVNCRPRFFRSRINSYLEERIGHLTSLFESREVLQKAIVRNPSLLLSDGRYNVKATVELYEKMGVKKGDLIQMLLLRPTVISRTSFDAEKLEYLSRTGLTVDSKMYKYVVTLIGISRVETIREKVANFEKFGFSEEEIFGLVGRSPNVLTLSTDKVQRNMTFILGTMKLDAKMVLKQPYLLYANVDTVLKPRVLLALKIQDMDSKWRIIGPTIVSVLRMQETRFLDLFVKCHGEDVANELMDFYKRTKGVKRLGESSKKCSRRGFPF 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g01732 372 PANTHER CGI-12 PROTEIN-RELATED 47 337 IPR003690 GO:0003690|GO:0006355
Phco1g01732 372 SMART mt_12 208 239 IPR003690 GO:0003690|GO:0006355
Phco1g01732 372 SMART mt_12 276 308 IPR003690 GO:0003690|GO:0006355
Phco1g01732 372 SMART mt_12 140 171 IPR003690 GO:0003690|GO:0006355
Phco1g01732 372 SMART mt_12 104 135 IPR003690 GO:0003690|GO:0006355
Phco1g01732 372 SMART mt_12 244 275 IPR003690 GO:0003690|GO:0006355
Phco1g01732 372 SMART mt_12 69 99 IPR003690 GO:0003690|GO:0006355
Phco1g01732 372 FunFam Mitochondrial transcription termination factor family protein 122 343 - -
Phco1g01732 372 Gene3D Transcription termination factor 3, mitochondrial 135 343 IPR038538 -
Phco1g01732 372 Pfam mTERF 111 330 IPR003690 GO:0003690|GO:0006355
Phco1g01732 372 Pfam mTERF 56 126 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g01732 Phco-Chr1 55703847 55704965 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Phco1g01732 mTERF 7.3e-29 No_clan