Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g01647 ATGGACTTTAGGGATGCAAAGGTTGGCTTCTTTCTGTTTTGTAGTTTCTGTCTTGTCACTTTCTCCGAACAAGATGGTTTCTTGAGTCTTTCTTGTGGTGGAAGAACCAGTTTCAGGGATTCATCTAACATTTCGTGGGTACCAGACACCACCTACGTAACCACAGGCAAGACTACTACCATCACATACAGTGAAGGTTCCTCCTCACTGAACATCTCAGCTCGGTTCTTCCCAAATTCGGGAAGGCGAAAATGTTACAGAATACCAGCAAACAACTCAACCACTTTGGTTCTTGTTAGAGCAAAATTTGTGTACAAGAACTATGATGGACTTGGGAAACCTCCTAAGTTCTATGTTTCAATTGGGACATCTATTGCTTCCACCATAAATCTTGCTGAAGATGATCCATGGAGTGAAGAGTTTCTATGGACAGTCAACACGGATACACTGCCATTCTGCTTAATTTCAATGCCTAAAGGGGGTTCACCTGTAATTTCTTCTCTTGAAATCAGACCACTTCCTCAGGGAGCCTACACAAATGGCATGACAGATTTTCCTAACAAGTTGCTTAGGAAGAGTTATAGAATTGATTGTGGACACTCAAATGATTCCATAAGGTATCCCTTGGATCCATTTGATAGAATATGGGATGCTGATAGAAGTTTCACACCCTTTCATGTTGCCATTGGGTTTAAGATTCAACTTAGCTTCAGACAGTCTAGTCTTGTAGAAGAACCACCACCAGCTGTTCTTCAAACTGGGAGAGTTTTGGCTCGAAGTAGTACTCTGACATACAACCTCCCTCTTGATGCATTAGGGGACTACTACATCATCCTCTACTTTGCAGGGATTCTTCCGGTCTTCCCCTCATTTGATGTCCTCATAAATGGAGAACTAGTAAAATCAAACTACAAAATAAATAGCTCTGAAACCAGTGCTTTATACTTAACACGAAAGGGAATTGGGAGCTTGAATATTACATTAAAGAGTATTAGCTTTTACCCTCAGATCAATGCATTTGAAGTTTATAAGATGGTTGATATTCCAACTGATGCCTCCTCAACCACAGTTTCAGCAATGCAAGTTATTCAGCAGTCCACTGGATTGGATCTTGGATGGGAGGATGATCCGTGTCTGCCTTCCCCATGGGAGAAAATTAGCTGTGAAGGAAGCCTTGTTACATCATTGTATCTTTCAGACATAAATTTGAGATTCATTAGTCCTACATTCGGTGACTTGTTAGACCTCAAAATACTGGATTTGCACAACACATCGCTTACTGGTGAAATACAGAACTTGGATGGCTTGCAGCATCTTGAGAAACTGAACCTAAGTTTCAATCAGCTAACATCTATTGGTGCAGATCTTGAGAACTTGATTAACCTTCAAATATTAGACTTGCAGAACAATAGTTTAATGGGAGTAGTACCTGATAGCTTGCGAGAGTTAGAGAACCTCCACTTACTGAATCTGGAAAACAACAAACTGCAAGGTCCTCTGCCACAGTCATTGAACAAAGAAACATTAGAGATCAGGACATCTGGTAATTTGTGTCTTACCTTTTCCACAACATCATGTGATGATGCATCATCCAGTCCTCCAATTGAAGCACCACAAGTTACTGTAGTTCCTCAGAAGAAGCACAATGTACATAACCATCTAGCAATCATAATAGGCATGGTTGGAGGAGCCACACTAGCCTTTCTCTTAATGTGTATTTCAGTGTTGATATACAAGACCAAACAACAATATGAAACCTCACACACATCAAGAGGAGAAATGGATATGAGGAACTGGGGTGCTGCAAAAGTATTTTCCTACAAAGAAATCAAAGTAGCTACAAGAAACTTCAAAGAAGTCATAGGAAAGGGTAGTTTTGGATCTGTTTATCTTGGGAAACTTCCAGATGGAAAATCTGTAGCTGTCAAAGTTCGGTTTGACAAATCTCAACTGGGTGCTGATTCTTTCATCAATGAGGTTAATCTTCTATCAAAAATCAGGCATCAAAATCTTGTGTCTTTGGAAGGATTTTGTCATGAAAGAAAGCATCAGATATTGGTTTATGAGTACTTGCCTGGTGGATCCCTGGCTGATCATCTCTATGATACAAACAGTCAGAAGACTTCCTTAAGCTGGGTGAGAAGGTTGAAAATTGCTGTTGATGCAGCAAAAGGTTTGGACTATTTGCACAATGGAAGTGAACCAAGAATCATACATCGTGATGTGAAGTGCAGTAACATCCTCTTGGACATGGATATGAATGGCAAGGTCTGTGACTTGGGTCTCTCTAAGCAAGTAACTCAGGCAGATGCAACTCATGTCACCACTGTTGTCAAGGGCACTGCTGGTTACCTTGATCCAGAGTATTATTCCACTCAGCAGTTGACAGAGAAAAGTGATGTATATAGCTTTGGAGTTGTTCTTTTGGAACTCATTTGTGGAAGAGAGCCATTGATTCACTCTGGAACTCCTGATTCATTCAACTTGGTGTTATGGGCTAAACCATACTTGCAGGCTGGTGCATTTGAGATAGTGGATGAAGACATAAGAGGAAGTTTTGATCCCTTGAGTATGAGGAAGGTAGCTCTCATGGCTATAAAGTCAGTGGAGAGGGATGCATCACAGAGGCCATCTATTGCAGAGGTATTGGCAGAGCTAAAGGAAGCCTACAATATTCAGCTCAGATTCCTTGAATCTTGTCAAAATGAGAATTGA 2715 0.4074 MDFRDAKVGFFLFCSFCLVTFSEQDGFLSLSCGGRTSFRDSSNISWVPDTTYVTTGKTTTITYSEGSSSLNISARFFPNSGRRKCYRIPANNSTTLVLVRAKFVYKNYDGLGKPPKFYVSIGTSIASTINLAEDDPWSEEFLWTVNTDTLPFCLISMPKGGSPVISSLEIRPLPQGAYTNGMTDFPNKLLRKSYRIDCGHSNDSIRYPLDPFDRIWDADRSFTPFHVAIGFKIQLSFRQSSLVEEPPPAVLQTGRVLARSSTLTYNLPLDALGDYYIILYFAGILPVFPSFDVLINGELVKSNYKINSSETSALYLTRKGIGSLNITLKSISFYPQINAFEVYKMVDIPTDASSTTVSAMQVIQQSTGLDLGWEDDPCLPSPWEKISCEGSLVTSLYLSDINLRFISPTFGDLLDLKILDLHNTSLTGEIQNLDGLQHLEKLNLSFNQLTSIGADLENLINLQILDLQNNSLMGVVPDSLRELENLHLLNLENNKLQGPLPQSLNKETLEIRTSGNLCLTFSTTSCDDASSSPPIEAPQVTVVPQKKHNVHNHLAIIIGMVGGATLAFLLMCISVLIYKTKQQYETSHTSRGEMDMRNWGAAKVFSYKEIKVATRNFKEVIGKGSFGSVYLGKLPDGKSVAVKVRFDKSQLGADSFINEVNLLSKIRHQNLVSLEGFCHERKHQILVYEYLPGGSLADHLYDTNSQKTSLSWVRRLKIAVDAAKGLDYLHNGSEPRIIHRDVKCSNILLDMDMNGKVCDLGLSKQVTQADATHVTTVVKGTAGYLDPEYYSTQQLTEKSDVYSFGVVLLELICGREPLIHSGTPDSFNLVLWAKPYLQAGAFEIVDEDIRGSFDPLSMRKVALMAIKSVERDASQRPSIAEVLAELKEAYNIQLRFLESCQNEN 904
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g01647 904 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 691 897 - -
Phco1g01647 904 ProSiteProfiles Leucine-rich repeat profile. 438 460 IPR001611 GO:0005515
Phco1g01647 904 ProSiteProfiles Protein kinase domain profile. 615 897 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco1g01647 904 Pfam Leucine rich repeat 438 496 IPR001611 GO:0005515
Phco1g01647 904 Pfam Malectin-like domain 30 345 IPR024788 -
Phco1g01647 904 CDD STKc_IRAK 621 888 - -
Phco1g01647 904 SMART LRR_typ_2 483 506 IPR003591 -
Phco1g01647 904 SMART LRR_typ_2 459 482 IPR003591 -
Phco1g01647 904 SMART LRR_typ_2 436 458 IPR003591 -
Phco1g01647 904 Gene3D Ribonuclease Inhibitor 356 528 IPR032675 -
Phco1g01647 904 ProSitePatterns Serine/Threonine protein kinases active-site signature. 737 749 IPR008271 GO:0004672|GO:0006468
Phco1g01647 904 SUPERFAMILY Protein kinase-like (PK-like) 595 886 IPR011009 -
Phco1g01647 904 Gene3D Phosphorylase Kinase; domain 1 577 690 - -
Phco1g01647 904 Pfam Protein tyrosine and serine/threonine kinase 617 885 IPR001245 GO:0004672|GO:0006468
Phco1g01647 904 Gene3D Transferase(Phosphotransferase) domain 1 691 900 - -
Phco1g01647 904 FunFam serine/threonine-protein kinase PBS1-like 581 690 - -
Phco1g01647 904 SMART serkin_6 615 890 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco1g01647 904 PANTHER OS07G0107800 PROTEIN-RELATED 451 890 - -
Phco1g01647 904 SUPERFAMILY L domain-like 359 506 - -
Phco1g01647 904 ProSitePatterns Protein kinases ATP-binding region signature. 621 643 IPR017441 GO:0005524
Phco1g01647 904 Gene3D - 192 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g01647 Phco-Chr1 54366521 54375427 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Phco1g01647 Malectin_like 2e-54 CL0202