Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g01646 ATGGTCCCATATTTCACACGAACTAGTACTACACACATATACACTTTTTCCCTTGTTCAAAATCGCCTTAGAGAAGGAAAAACGGAGCAAAGAGAGAAAACGATGTCTCTTCCAAGACCCCGAAGTGCTGAGAAAGCCCTTTCTGAGCTTAAAGAAGTAGCAGCACCAGCATCAGCATCAGCATCTTCTTCATGGAATAGGCTACACAACTTCCCTCCTTTAAATCTGCACAACAAGACTAGCAAAATTGAAGACAGTGATGAAGATATGTTCACAGTTCCAGATGTGGAGACCACACCCATTAGTGTTCATTCTGCGCTGACTCTTCAAAATAATAACCTTAGTCAACGTAATGTGATAGACCCTCAATTTCAAACTGGTTTTCCTGGAAAGCGTCGCAGGGGAAGAAACCCCGCAGATAAGGAACATAGACGTCTCAAGAGGTTGTTAAGAAATAGAGTTTCTGCTCAACAAGCCCGCGAAAGAAAGAAGGTTTATGTGAATGATTTGGAAGCAAGAGGCAAAGAGTTGCAAGATAAAAATGCTATCTTAGAAGAACGTATCTCTACTTTGATCAATGAGAACACCATGCTTAGGAAGGTTCTTATGAATGCAAGGCCAAAAGTAGACGATAACAATGAACAAAAGCAAGAGCAGTTAAGTAAGAGCTAA 672 0.4092 MVPYFTRTSTTHIYTFSLVQNRLREGKTEQREKTMSLPRPRSAEKALSELKEVAAPASASASSSWNRLHNFPPLNLHNKTSKIEDSDEDMFTVPDVETTPISVHSALTLQNNNLSQRNVIDPQFQTGFPGKRRRGRNPADKEHRRLKRLLRNRVSAQQARERKKVYVNDLEARGKELQDKNAILEERISTLINENTMLRKVLMNARPKVDDNNEQKQEQLSKS 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g01646 223 SMART brlzneu 140 204 IPR004827 GO:0003700|GO:0006355
Phco1g01646 223 Coils Coil 167 194 - -
Phco1g01646 223 Gene3D Single helix bin 163 204 - -
Phco1g01646 223 MobiDBLite consensus disorder prediction 122 143 - -
Phco1g01646 223 CDD bZIP_HY5-like 154 195 - -
Phco1g01646 223 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 142 205 IPR004827 GO:0003700|GO:0006355
Phco1g01646 223 Pfam bZIP transcription factor 141 200 IPR004827 GO:0003700|GO:0006355
Phco1g01646 223 FunFam Transcription factor HY5 163 204 - -
Phco1g01646 223 SUPERFAMILY Leucine zipper domain 144 203 IPR046347 GO:0003700|GO:0006355
Phco1g01646 223 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 147 162 IPR004827 GO:0003700|GO:0006355
Phco1g01646 223 PANTHER TRANSCRIPTIONAL ACTIVATOR HAC1 54 219 IPR044280 GO:0000981|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g01646 Phco-Chr1 54355606 54359057 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Phco1g01646 bZIP_1 1.2e-11 CL0018