Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g01629 ATGGAACAGGGTCAATGTTGGACAAAGAGGAAGTACTCTTTGAGCGCTAGTCTTGGTTCACCAACCAACCCTTCCTATGGTGACTCGTGGGAAGAACAAGCTTTTGCAGAAGATGCTGCTAATTCTCTTGGTGGCTGCGTATGGCCTCCAAGATCGTACTCTTGTAGCTTTTGCAGAAGAGAGTTTAGGTCAGCACAGGCTCTAGGTGGCCACATGAATGTTCATAGAAGGGATAGAGCAAGACTAAAGCAACAACCCTCTAGCCCCCACAATGAAATTCTATGTCATGACCTTGAAACTCAACTCCATAAGCCAGTTCAAAGTCCTTTTGCTTCTTTGGATGACTACCTATACCCTTCTCCTGTTTGTGGATTGGCTTATAAAAAAACTAAACCTAATTCTTATCCTGATTTTGTTGCTTCACCTTCTTCACCCTCACATTCCAAGGCCTTATTGGCTCCATCAGTTAATAGTGGTAACTCCAGAGAGGAAACCATGATTCCATTTTATGATTCCAGTATTCTCCACAAGATTTCTCCTGTCAGTAATTCTTCCGAATCATGGCCAAATTTAGCTGAAGATCATGGATTATATTCATGTAAGTTCCATCCTCTAGCTGATACGAAGAAACCCTCCAAGGGAATAATGGATTCTAGATGCTGGGGTAATAAGGGGGATAATGATGATATTGATGGGGATATGAGCCTGAATTCAGTTGTGTATAGTACTCACCCATTTTTGCAGTTTGAGAGTACTAAAGAGGCAGATCATATCAGTTGGATGAAGAGGAAAACAGATGCTTCCTCATCGCCATTTTCCCCAGAGTCAAGCTCAGTTGATAGAAATCATGTGCAGCCAAAGATGCTTGAATTTAGCCCTAGCTCACTGGAAGAGCTAGATCTGGAGTTAAGGCTTGGTTACAGGTCCAAGGTATAG 936 0.4252 MEQGQCWTKRKYSLSASLGSPTNPSYGDSWEEQAFAEDAANSLGGCVWPPRSYSCSFCRREFRSAQALGGHMNVHRRDRARLKQQPSSPHNEILCHDLETQLHKPVQSPFASLDDYLYPSPVCGLAYKKTKPNSYPDFVASPSSPSHSKALLAPSVNSGNSREETMIPFYDSSILHKISPVSNSSESWPNLAEDHGLYSCKFHPLADTKKPSKGIMDSRCWGNKGDNDDIDGDMSLNSVVYSTHPFLQFESTKEADHISWMKRKTDASSSPFSPESSSVDRNHVQPKMLEFSPSSLEELDLELRLGYRSKV 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g01629 311 PANTHER OS07G0101800 PROTEIN 25 308 - -
Phco1g01629 311 SUPERFAMILY beta-beta-alpha zinc fingers 50 79 IPR036236 -
Phco1g01629 311 MobiDBLite consensus disorder prediction 264 283 - -
Phco1g01629 311 ProSitePatterns Zinc finger C2H2 type domain signature. 55 75 IPR013087 -
Phco1g01629 311 Pfam C2H2-type zinc finger 53 77 - -
Phco1g01629 311 ProSiteProfiles Zinc finger C2H2 type domain profile. 53 80 IPR013087 -
Phco1g01629 311 Gene3D Classic Zinc Finger 49 102 - -
Phco1g01629 311 SMART c2h2final6 53 75 IPR013087 -
Phco1g01629 311 MobiDBLite consensus disorder prediction 264 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g01629 Phco-Chr1 54075700 54076635 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Phco1g01629 zf-C2H2_6 1.3e-05 CL0361