Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g01623 ATGGCCAACCTCAACATGCTCCTCGGACTCTTGTCTTTGTTGCTGTTCCTTCTGATCTCAGTTTCATCTCAGCCTAACCAGATCTTCTATGCTGGATTCAAGGGTGTGGATAGCAACAACATGACCCTTGATGGTGTAGCAGAAATAGAGCCAAGTGGGGTACTGAAACTCACAAATGATTCAAGTAAGGTAATGGGTCATGCTTTTTATCCAACTGCTCTTCAGTTCAAGAACTCTAGTGATGGTAAAGCTTTCTCCTTTTCTTCCTCTTTTGCTTTGGTTATTGTTCCTGAGTTTCCAAAGCTAGGAGGGCATGGCCTTGCTTTTACAATTGCAACTTCTAAGGATCTGAAGGCTCTTCCAAGCCAATATCTTGGTCTTCTTAACTCAACTGACATAGGGAACTTCTCCAACCACCTCTTTGCTGTTGAGTTTGACACAGCCCAAGATTTTGAGTTTGGGGACATCAATGATAACCATGTTGGAATTGACATCAATAGCTTGGTATCCAATGCTTCTGCACCTGCTGGTTACTACACTGGGGATCATGATTCAGACAAACAGAATCTCACTCTCAAAAGTGGGCAACCTATTTTGGTCTGGGTTGATTATGATTCTGCTCAAAGTGTTGTTAATGTCACAATTTCTGCATCATCTACCAAACCCACAAGACCACTCTTGTCCTTTCCTGTGGATCTTTCACCAATTCTTGAGGATTCCATGTATGTAGGATTCTCTGCATCAACAGGTTTGCTTGCTAGCTCCCATTACATCTTGGGTTGGAGCTTCAAAATCAATGGGCCAGCTCCACCCCTTGATCTCTCTTCTCTCCCGCAGCTTCCAGGACCAAAGAGGAAACACACATCTTTGATAATTGGGGTTTCAGTCTCTGGTGTTGTTCTTGCCTTGTTTGCTGTCTTACTCGGCTTCTACATGTACAGAAGGTACAAGAATGCTGATGTTATAGAAGCTTGGGAGCTTGAGATTGGGCCACACAGGTACTCCTACCAAGAGCTCAAGAAAGCAACAAAAGGTTTCAAGGACAAAGAGCTGCTTGGACAAGGTGGATTTGGGAGTGTCTACAAAGGAACATTGCCAAATTCCAATACCCAAGTTGCTGTTAAGAGAATATCACATGACTCCAAACAAGGCCTGAGGGAATTTGTATCTGAAATAGCCAGCATAGGCAGGCTTCGCCACCGGAATCTGGTTCAGCTGCTGGGGTGGTGTCGCCTCCGCGGTGACCTCCTCCTTGTGTATGATTTCATGGCTAATGGGAGCTTAGACAAGTACCTGTTTGATGAACCAGAAAGAATCCTAAGTTGGGAGCAAAGGTTTAAGGTAATCAAGGATGTTGCTTCTGCCCTTTTGTATCTGCATGAGGGCTATGAGCAGGTGGTGATACATAGAGATGTGAAGGCTAGCAATGTGCTGCTAGATGGTGAACTCAATGGAAGACTAGGAGATTTCGGATTAGCAAGGTTGTATGAACATGGGGCTAACCCAAGTACCACAAGGGTGGTGGGGACCTTAGGCTATTTGGCTCCTGAGGTGCCTAGGACAGGGAAGGCTACTCCTGGCTCAGATGTTTTTGCATTTGGTGCACTTTTACTGGAGGTGGCATCTGGGCTCAGGCCACTTGATCCAAAGGCAATGCCAGAAGATTTGGTTTTGGTTGATTGTGTGTGGAACAAGTACAAGCAAGGGAGAATACTTGATGTGGTGGACCCTAGACTAAATGGTGCTTTTAATGAAAGAGAGGTGCTCATGGTGTTGAAATTGGGGCTTCTGTGTTCAAATGGTTCTCCCACTGCTAGGCCTAGCATGAGACAGGTGGTGAGGTTTTTGGATGGAGAAGTTGGTGTGCCAGATGAGTTGAGAAGACCAGGAGAGACATGTTCTCAGGAGGGTTTTGATGAATTCTTGCACTTACTTGAATCTTCTTCCTTTGATCAGATGAGCAGAAGCTCCTATGATAGAAGTAGACACATGGGTGGTAGTTTTCCTTCTTTTACTGATACATCTCTTATTACTCCCCATGGTAAAGGAGAAACAATTTGA 2061 0.4483 MANLNMLLGLLSLLLFLLISVSSQPNQIFYAGFKGVDSNNMTLDGVAEIEPSGVLKLTNDSSKVMGHAFYPTALQFKNSSDGKAFSFSSSFALVIVPEFPKLGGHGLAFTIATSKDLKALPSQYLGLLNSTDIGNFSNHLFAVEFDTAQDFEFGDINDNHVGIDINSLVSNASAPAGYYTGDHDSDKQNLTLKSGQPILVWVDYDSAQSVVNVTISASSTKPTRPLLSFPVDLSPILEDSMYVGFSASTGLLASSHYILGWSFKINGPAPPLDLSSLPQLPGPKRKHTSLIIGVSVSGVVLALFAVLLGFYMYRRYKNADVIEAWELEIGPHRYSYQELKKATKGFKDKELLGQGGFGSVYKGTLPNSNTQVAVKRISHDSKQGLREFVSEIASIGRLRHRNLVQLLGWCRLRGDLLLVYDFMANGSLDKYLFDEPERILSWEQRFKVIKDVASALLYLHEGYEQVVIHRDVKASNVLLDGELNGRLGDFGLARLYEHGANPSTTRVVGTLGYLAPEVPRTGKATPGSDVFAFGALLLEVASGLRPLDPKAMPEDLVLVDCVWNKYKQGRILDVVDPRLNGAFNEREVLMVLKLGLLCSNGSPTARPSMRQVVRFLDGEVGVPDELRRPGETCSQEGFDEFLHLLESSSFDQMSRSSYDRSRHMGGSFPSFTDTSLITPHGKGETI 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g01623 686 CDD lectin_legume_LecRK_Arcelin_ConA 30 267 IPR001220 GO:0030246
Phco1g01623 686 FunFam L-type lectin-domain containing receptor kinase S.4 24 271 - -
Phco1g01623 686 Gene3D Phosphorylase Kinase; domain 1 331 422 - -
Phco1g01623 686 ProSitePatterns Protein kinases ATP-binding region signature. 352 375 IPR017441 GO:0005524
Phco1g01623 686 Gene3D Transferase(Phosphotransferase) domain 1 423 627 - -
Phco1g01623 686 SUPERFAMILY Concanavalin A-like lectins/glucanases 33 285 IPR013320 -
Phco1g01623 686 SMART serkin_6 346 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco1g01623 686 SUPERFAMILY Protein kinase-like (PK-like) 328 638 IPR011009 -
Phco1g01623 686 FunFam Lectin-domain containing receptor kinase A4.3 331 422 - -
Phco1g01623 686 Pfam Protein tyrosine and serine/threonine kinase 349 616 IPR001245 GO:0004672|GO:0006468
Phco1g01623 686 PANTHER - 19 623 - -
Phco1g01623 686 ProSiteProfiles Protein kinase domain profile. 346 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco1g01623 686 FunFam L-type lectin-domain containing receptor kinase S.4 423 628 - -
Phco1g01623 686 CDD STKc_IRAK 352 618 - -
Phco1g01623 686 ProSitePatterns Serine/Threonine protein kinases active-site signature. 467 479 IPR008271 GO:0004672|GO:0006468
Phco1g01623 686 Gene3D - 27 266 - -
Phco1g01623 686 Pfam Legume lectin domain 29 277 IPR001220 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g01623 Phco-Chr1 53984472 53986532 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Phco1g01623 PK_Tyr_Ser-Thr 4.6e-44 CL0016