Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g01613 ATGGCACAGGCAGTGGGGCGGAGCAGGGTGGTCGGAGAATACGTGGTGGGGAGGCAAATCGGCTCGGGGTCATTCTCGGTGGTGTGGCACGGAAGGCACAAGGTGCACGGAACCGAGGTGGCAATAAAGGAGATCGCCACACTTCGCCTCAATAAAAAGTTGCAGGAGAGCCTCATGTCCGAGATTTTCATCTTGAAGCGGATTAACCACCCTAACATAATCTGTTTGCACGATATCATTCAGGTTCCTGGGAAGATACATCTTGTGTTAGAATACTGTAAAGGGGGAGATCTGTCCTTGTACATTCAACGCCATGGAAGGGTACCAGAGGCAACTGCAAAGCATTTTATGCAGCAGCTGGCGGCTGGTCTACTAGTTCTTCGAGATAATAACCTTATTCATCGAGACCTGAAACCACAGAACCTTCTTCTCTCCCAAAATGATGAGAAGTCAGTGCTGAAGATTGCTGACTTTGGATTTGCAAGATCTCTGCAACCTAGGGGCCTTGCTGAAACCTTGTGTGGTTCACCACTGTACATGGCTCCAGAAATCATGCAACTACAGAAGTATGATGCTAAGGCAGATCTCTGGAGTGTTGGTGCAATCTTATTTCAGCTGGTTACAGGAAGAACACCTTTTACTGGAAACAATCAAATACAGTTACTACAGAATATTTTGAAATCGACAGAATTGCAGTTTCCATCTGATAGTCCAAGTCTGAGTTTTGAATGCAAAGATTTATGTCAGAAATTGCTACGTCAGCATCCGGTGGAACGTCTAACTTTTGAAGAATTTTTTAACCACCCATTTCTTTCTCAGAAGCAAAGAGAACAGGATGATGAGCCATTGAGGAGTAGAAGTTCTTCAAGGCTGGTTGGTGGGTTTTATTCCACTGTGAGAAGAACTGATGAAAATTACCAAGAAGATTGTTTGCCTTTCATCCTAGATGACGACTCTGGTGGCCCTGAGGGGAGTCCATCCTTTTCAAGAAAAAAACCCTCAATAAAATCCACCTATGGATTTGATCTAAATTCTAAACTAGATAAAGCAGATTCAACATCTCCTCTGTATAATAACATAAATTCTAATTCTGGATTTGCTAGTGTGACACAAAGATCTGATAACACTAATAGAAGATTGGACAACCATAACATTTCAAGAAATCTCACTGATCCTCTGGAATCTCCAGAACAGATGTTTGCAAATCCTTATCCAAAAGTTACAGATTCCTTGGAGAATATTGATCAAGAATATGTTCTGGTGCCAGGGCTCCCTGATGTTTCGTCTTCTTCAGTGGGTGCTTCACGGCCCAGCCATACTCCATATAGGTCTGGTAGTTTACCCCAAGAGTCTTCCAGTTCAATCACTAGACCTAGTGCTCCAATGCCAATAGTTGGTGTACATACAAATAGCACTTACCAAGTTGGAAGTTCAGGAAGTCAGGACTCTGCTCCTGGGACTTCGCTTGGATCGATGGATATAGGTGATGAACAGCCATCAGCTCACTGCATGACTAGGGTGAAATCATTGCAACAGTGTGCATCTGCCATCACCGAGTTAGTTAATGAAAAGATGGAGGCAGGAAAACATCTAGAGGCATTTTCTATTCAGCTTGTTATTCTTGCAATCTGGAAGCAAGCGCTGCACATATGCCATACACAAGCTGCCTCAGCCATGGAAGGAAGTCCAAATCAAGAAACTTCGAGATATAGAAAGGGTGCCAGCAGGAAGCATGGCAGTCCTGATTCGGAAGAATGCCTTGATGGAAACACCCTAGGGCCAAAGGATATATTATCTAAAATTGAAAGTGATTTTTTGAGGGAATATGAGCACGCTGAAGAACTTGCCAAGACCATTGAGCCTGGAAACACTGAGATGCCAGATGCAATGGAGACAATATTTCAATCTGCTCTTGCTTTTGGAAGACATGGGGGTGTAGAAGAACTCATGGGTGACATGGAAAGTGCAGCTGCGTTGTATTCAAAAGCTGTTCGTCTGTTAGTTTTCCTTCTAGTGGAAGGACCATCCCTGATTCTTAATCCTCCGTTTTCACTGACAAACTCAGATCGTTACAGACTTCGAAATTACATTGATATTCTTAATAACAGACAAGGTTATTCAAGGTCTCAGCGAATGGCACTACTGAAATGTGATGACAGTCAAGGTATCCTTAAGGAAAAATTTTAG 2187 0.4316 MAQAVGRSRVVGEYVVGRQIGSGSFSVVWHGRHKVHGTEVAIKEIATLRLNKKLQESLMSEIFILKRINHPNIICLHDIIQVPGKIHLVLEYCKGGDLSLYIQRHGRVPEATAKHFMQQLAAGLLVLRDNNLIHRDLKPQNLLLSQNDEKSVLKIADFGFARSLQPRGLAETLCGSPLYMAPEIMQLQKYDAKADLWSVGAILFQLVTGRTPFTGNNQIQLLQNILKSTELQFPSDSPSLSFECKDLCQKLLRQHPVERLTFEEFFNHPFLSQKQREQDDEPLRSRSSSRLVGGFYSTVRRTDENYQEDCLPFILDDDSGGPEGSPSFSRKKPSIKSTYGFDLNSKLDKADSTSPLYNNINSNSGFASVTQRSDNTNRRLDNHNISRNLTDPLESPEQMFANPYPKVTDSLENIDQEYVLVPGLPDVSSSSVGASRPSHTPYRSGSLPQESSSSITRPSAPMPIVGVHTNSTYQVGSSGSQDSAPGTSLGSMDIGDEQPSAHCMTRVKSLQQCASAITELVNEKMEAGKHLEAFSIQLVILAIWKQALHICHTQAASAMEGSPNQETSRYRKGASRKHGSPDSEECLDGNTLGPKDILSKIESDFLREYEHAEELAKTIEPGNTEMPDAMETIFQSALAFGRHGGVEELMGDMESAAALYSKAVRLLVFLLVEGPSLILNPPFSLTNSDRYRLRNYIDILNNRQGYSRSQRMALLKCDDSQGILKEKF 728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g01613 728 FunFam Aurora kinase A 7 96 - -
Phco1g01613 728 ProSitePatterns Serine/Threonine protein kinases active-site signature. 132 144 IPR008271 GO:0004672|GO:0006468
Phco1g01613 728 SUPERFAMILY Protein kinase-like (PK-like) 10 457 IPR011009 -
Phco1g01613 728 CDD STKc_ATG1_ULK_like 20 270 - -
Phco1g01613 728 ProSiteProfiles Protein kinase domain profile. 14 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco1g01613 728 Pfam Protein kinase domain 14 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco1g01613 728 MobiDBLite consensus disorder prediction 427 460 - -
Phco1g01613 728 PANTHER SERINE/THREONINE-PROTEIN KINASE UNC-51-RELATED 3 637 IPR045269 GO:0004674|GO:0006914
Phco1g01613 728 MobiDBLite consensus disorder prediction 363 398 - -
Phco1g01613 728 Gene3D Transferase(Phosphotransferase) domain 1 6 309 - -
Phco1g01613 728 MobiDBLite consensus disorder prediction 428 460 - -
Phco1g01613 728 SMART serkin_6 14 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco1g01613 728 ProSitePatterns Protein kinases ATP-binding region signature. 20 43 IPR017441 GO:0005524
Phco1g01613 728 MobiDBLite consensus disorder prediction 570 584 - -
Phco1g01613 728 MobiDBLite consensus disorder prediction 556 591 - -
Phco1g01613 728 FunFam Serine/threonine-protein kinase ATG1 6 311 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g01613 Phco-Chr1 53822828 53831355 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Group-Pl-3 Phco1g01613 Pkinase 1.8e-70 CL0016