Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g01577 ATGGCTTTTACTTCCATACCAGCTTCTTATTTTGATGCAGCCAACTGGCAGCAACAGCAACCAAATAGCCAAGCCGGAGGCACTGGTTCCACCTTTCGGCAGCTGCTACCACCACCACCACAGCCACCGCTTCCGGCTGCAATGCAGTCTCATGGAGAGGGCTCAATCAGGCCAGGATCCATGGCTGATAGGGCAAGGATGGCCAACATGCCAATGCCAGAGGTTGCACTCAAGTGTCCACGCTGCGAATCAACCAACACCAAATTTTGCTACTTCAACAACTACAGTCTCTCCCAGCCCCGCCACTTCTGCAAGACCTGCAGAAGGTACTGGACCAGAGGTGGCGCCCTAAGAAGCGTCCCCGTCGGCGGAGGCTGCAGGAGGAACAAGCGGAGTAAAGGAGGCGGCGGCTCCAACTCTCCGGCAAGCTCTGACCGCCAGACAGGAAGTGTCAATTCCACCAACTCGGTATCTTCCAAGAGTGAGAGAATAGGGCTGGCACCCCACCTTCCACCGCTCAGATTCATGCCTCCATTGCATCAACTCGCTGAGTTTGGAGATGGAGATATTGGCCTAAACTATGGCCTCAGTTATGGCCCAGTGGGAGGAGTTGGGGACTTGAGTTATCAAATTGGAGCAAGTGCTTTTGGTGGTGCCACTTCAATCTTGTCTGCACCTGCTTTGGACCAATGGAGAATGCCACAGCAGTTTCCCCTCCTTGCTTCCTTGGAAGCTTCATCACCAGCTTCTAATTTATACCCTTTTGAAGGCAATGCTCAGGTGAGTGGATATATGAGGCCAAAGATTTCAACTTCTGGGATCATGACTCAGCTAGCTTCAGTGAAAATGGAAGATGCTAGGGAACCTAACTTGCCAACCCATTTCTTGGGAAACAATAATCCAGTGAGTGAACAATATTGGACCAGTGCTACTTCTGCATCATGGACTGATATTTCTGGCTTTAGCTCTTCTTCAACTACTAGCAACCATCTTTAG 996 0.509 MAFTSIPASYFDAANWQQQQPNSQAGGTGSTFRQLLPPPPQPPLPAAMQSHGEGSIRPGSMADRARMANMPMPEVALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRSVPVGGGCRRNKRSKGGGGSNSPASSDRQTGSVNSTNSVSSKSERIGLAPHLPPLRFMPPLHQLAEFGDGDIGLNYGLSYGPVGGVGDLSYQIGASAFGGATSILSAPALDQWRMPQQFPLLASLEASSPASNLYPFEGNAQVSGYMRPKISTSGIMTQLASVKMEDAREPNLPTHFLGNNNPVSEQYWTSATSASWTDISGFSSSSTTSNHL 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g01577 331 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 57 168 IPR045174 GO:0003700|GO:0006355
Phco1g01577 331 MobiDBLite consensus disorder prediction 14 31 - -
Phco1g01577 331 MobiDBLite consensus disorder prediction 133 162 - -
Phco1g01577 331 MobiDBLite consensus disorder prediction 14 60 - -
Phco1g01577 331 Pfam Dof domain, zinc finger 76 131 IPR003851 GO:0003677|GO:0006355
Phco1g01577 331 ProSiteProfiles Zinc finger Dof-type profile. 77 131 IPR003851 GO:0003677|GO:0006355
Phco1g01577 331 MobiDBLite consensus disorder prediction 121 163 - -
Phco1g01577 331 ProSitePatterns Zinc finger Dof-type signature. 79 115 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g01577 Phco-Chr1 53175391 53176823 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Phco1g01577 zf-Dof 6.1e-32 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g01996 3 45243851 45245094 Phco1g01577 1 53175391 53176823 PCT