Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g01547 ATGGGACTTCTTGCACTAAATTCAAAGGTTTACAGGAGGTACAGGCAATACTATCAGCAGATGCACGCAGTAGTAACATCATTTGAGTATGTTTCAGGCCTCAGCAATGCAGCTCCCTATGCAAGTTTGGCTATAAAAGCCATGTCCAAACATTTTAGATGCTTGAAGAATGCAATTACTGACCAACTTCAGTTTGCCAATAAAGCTCATTTTCACATCAGCAACAGGAAGGATGAATCTTCAAGGTTTGGCAACAGTGATAGAGGCCCATACAGCCAAAGGCCAGGGTTTCTTGAGCACCAACCTGTTTGGCGGCCTCAAAGAGGACTCCCCGAGCGTGCTGTGACCGTTCTCAGAGCATGGTTGTTTGAGCACTTTCTGCACCCTTATCCTACTGATACAGACAAGATAATGTTGGCTAAACAAACTGGTCTATCTCGTAGCCAGGTGTCTAATTGGTTCATTAATGCAAGAGTAAGGCTCTGGAAACCAATGGTGGAAGAAATACATATGCTAGAAACACGGCAGGCTCAAAAGAATTCCCAGAAGGAAGAACATTGCAGGAACAAGTCAAGTGATCAATTACCTTCTGATAACTCCATTGTTTCTGAGAATCCATCTGGGTCAACAGAAAAGTTTCAGGATGCTCCTTACAAGCGAGCTACAGACGAACTTCCTAACATACCAGTTAGGACTCAGGAACAGCTGAATCTTCCCTGCACAAGCAATCAGCCAGGTGGTGTTGGACTGAGCATGGGTGGCAGTGCAAGCAATAGTGTGTCACTCACACTTGGACTATATCAAAATCATGGTATTGGTTTGGCTGAACCTTTTACCTTGAATGCAGCGCAGCGATTTGGTGTTGCTCTTGAAACCAACAATGAAGGCTATGTGATGAGTGGATATGAGTCACAGAATAGGCATTTTGGAGGACAACTGTTGCATGACTTTGTAGGCTGA 960 0.4427 MGLLALNSKVYRRYRQYYQQMHAVVTSFEYVSGLSNAAPYASLAIKAMSKHFRCLKNAITDQLQFANKAHFHISNRKDESSRFGNSDRGPYSQRPGFLEHQPVWRPQRGLPERAVTVLRAWLFEHFLHPYPTDTDKIMLAKQTGLSRSQVSNWFINARVRLWKPMVEEIHMLETRQAQKNSQKEEHCRNKSSDQLPSDNSIVSENPSGSTEKFQDAPYKRATDELPNIPVRTQEQLNLPCTSNQPGGVGLSMGGSASNSVSLTLGLYQNHGIGLAEPFTLNAAQRFGVALETNNEGYVMSGYESQNRHFGGQLLHDFVG 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g01547 319 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 8 186 - -
Phco1g01547 319 MobiDBLite consensus disorder prediction 175 192 - -
Phco1g01547 319 SMART HOX_1 104 168 IPR001356 GO:0003677
Phco1g01547 319 Pfam Associated with HOX 3 60 IPR006563 -
Phco1g01547 319 Pfam Homeobox KN domain 121 160 IPR008422 GO:0003677|GO:0006355
Phco1g01547 319 ProSiteProfiles 'Homeobox' domain profile. 101 164 IPR001356 GO:0003677
Phco1g01547 319 SUPERFAMILY Homeodomain-like 106 171 IPR009057 -
Phco1g01547 319 MobiDBLite consensus disorder prediction 193 212 - -
Phco1g01547 319 CDD homeodomain 104 165 IPR001356 GO:0003677
Phco1g01547 319 SMART prehox3 1 61 IPR006563 -
Phco1g01547 319 Gene3D - 107 169 - -
Phco1g01547 319 FunFam BEL1-like homeodomain protein 9 107 169 - -
Phco1g01547 319 MobiDBLite consensus disorder prediction 175 220 - -
Phco1g01547 319 MobiDBLite consensus disorder prediction 76 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g01547 Phco-Chr1 52538993 52540699 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Phco1g01547 POX 5.3e-24 No_clan