Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g01524 ATGAAGGAAAGGCAACGTTGGAAGGCTGAAGAGGATGCATTGTTATGTGCTTATGTGAGAGAGTATGGTCCTAGGGAATGGAACCTTGTGTCTCAGCGCATGAACACAACTCTGAACAGGGATGCAAAGTCATGCTTAGAAAGGTGGAAGAACTACCTGAAGCCTGGCATCAAGAAGGGGTCTCTAACCGAGGAAGAGCAGCGCCATGTAATTCGGCTTCAAGCGAAACACGGCAACAAGTGGAAGAAAATTGCTGCTGAAGTTCCAGGTAGAACTGCCAAGAGGTTAGGGAAGTGGTGGGAAGTGTTTAAGGAGAAGCAACAAAGGGAGAAACAAGAGATTAACAAAGCAATTGGCCCAGTTGATAACACCAAATATGATCACATTCTTGAGACTTTTGCTGAGAAGCTAGTGAAAGAACACCCTTCACAATCATCATACCTTATGGCTGCTTCTACTGGACCCTTTATCCATGATGCACATGCAACTGTTCCTGCACCTGCACCTGCATCATCAGCAGCAGCATTGCTTCCTCCTTGGCTTTCAAATTCTAGCACCACCAATCCCTCACCAGCAATTATGCCACCTTCCCCTTCTGTGACCCTCAGTCTCTCCTCAACAGCACCTCCTCCCCCTTGGTTGAATGTAACAACACCTCATGGTGATAGCATAGTAGTTTCAGAGTTAATAGACTGCTGTAAGGAGTTGGAAGAAGGGCATCATGCTATGGTGGTGCATAGGAAGGAGGCAGCATGGCTGTTGAGAAGGGTGGAGCTGCAGTTGGAGGCAGAGAAGGGAAACAGAAGGAGGGAAAAGATGGAGGAAATTGAAGCAAAGATGAAGGCTTTGGGGGAAGAAAAGAATGCTGCTTTGGATAGGATAGAAGCAGAATATAGAGAACAGTTAGCAGGGTTGAGGAGAGATGCAGAAAGCAAGGAGCAGAAGCTGATTGAGGAATGGAATGCAAAGCACATGAGGGTAGTGAAGTGTATGGAACGACAAGTAGGATGCAGAATATCCAGAATTGCTGAGCCTAATGGGAGATAA 1047 0.4651 MKERQRWKAEEDALLCAYVREYGPREWNLVSQRMNTTLNRDAKSCLERWKNYLKPGIKKGSLTEEEQRHVIRLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREKQEINKAIGPVDNTKYDHILETFAEKLVKEHPSQSSYLMAASTGPFIHDAHATVPAPAPASSAAALLPPWLSNSSTTNPSPAIMPPSPSVTLSLSSTAPPPPWLNVTTPHGDSIVVSELIDCCKELEEGHHAMVVHRKEAAWLLRRVELQLEAEKGNRRREKMEEIEAKMKALGEEKNAALDRIEAEYREQLAGLRRDAESKEQKLIEEWNAKHMRVVKCMERQVGCRISRIAEPNGR 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g01524 348 FunFam MYB-related transcription factor 4 58 - -
Phco1g01524 348 Gene3D - 62 122 - -
Phco1g01524 348 Gene3D - 4 58 - -
Phco1g01524 348 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 108 IPR017930 -
Phco1g01524 348 Coils Coil 254 293 - -
Phco1g01524 348 Coils Coil 295 315 - -
Phco1g01524 348 Pfam Myb-like DNA-binding domain 7 69 - -
Phco1g01524 348 ProSiteProfiles Myb-like domain profile. 1 53 IPR001005 -
Phco1g01524 348 CDD SANT 6 53 IPR001005 -
Phco1g01524 348 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 57 IPR017930 -
Phco1g01524 348 SMART sant 58 106 IPR001005 -
Phco1g01524 348 SMART sant 3 55 IPR001005 -
Phco1g01524 348 PANTHER PROTEIN ROUGH SHEATH 2 HOMOLOG 1 342 - -
Phco1g01524 348 SUPERFAMILY Homeodomain-like 4 98 IPR009057 -
Phco1g01524 348 CDD SANT 63 104 IPR001005 -
Phco1g01524 348 ProSiteProfiles Myb-like domain profile. 54 104 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g01524 Phco-Chr1 51905047 51906093 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Phco1g01524 Myb_DNA-bind_6 1e-13 CL0123