Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g01523 ATGAAGGAGAGGCAACGTTGGAGAGCTGAAGAGGATGCTTTATTACGTTCTTATGTCAAACAATATGGTCCTAGGGAATGGAATCTTGTGTCTCAGCGCATGAACACAACTCTGAACAGGGATGCAAAGTCATGCTTAGAAAGGTGGAAGAACTACCTGAAGCCTGGCATCAAGAAGGGTTCTCTAACCGAGGAAGAGCAGCGCCTTGTAATCCGGCTTCAAGCGAAACACGGCAACAAGTGGAAGAAAATTGCTGCAGAAGTTCCAGGCAGAACTGCCAAGAGGTTAGGGAAGTGGTGGGAAGTATTCAAAGAGAAGCAACAAAGAGAGAATAAGGAGCTCAATAGAATCCCTGACCCGATTAACAACAGCAAGTACGAGCACATACTTGAGAGTTTTGCAGAAAAACTAGTAAAGGAACAACATCCTTCACCGTCATTTGTTATGGCTGCTTCTAATGGGCCATTTCTGCGTACTGATACAGCAGCACCTGCATCAGCCTTGCTTCCTTCTTGGCTTTCCAACTCTAGTAGTGCTGCTGCTGCTGGCCCAAGTTCCCTTTCTGTGACACTAAGTCTTTCTTCCTCAACAGTTGCTGCACCTCCATTCTCATGGTTGCAACCTGATAGGGGACCAGACAATGTTCCTTTTGTTTTGGGGAATATACAAGCTTTCAGTGAAAATATGCTGATATCTCAGATGATGGAGCACTGCAAAGAGTTGGAAGAGGGGCAACGAGCTTTGGGTGCTCACAAGAAGGAGGCAGGTTGGCGGTTAAGCCGGGTGGAGTTGCAGTTGGAGTCAGAGAAGGCGAGCCGAAGAAGGGAGAAAATGGAAGAGTTTGAAGCAAAGATTAAGGCTCTGCAGGAAGAGGAGAGAGCTGCTTTGGGCAGAATCGAAGCAGAATACAGAGAAGAGTTAGCTGCATTGAAGAGAGATGCTGAAAACAAGGAACAAAAGTTAGCAGAACAATGGGCTGCAAAGCATCTGCAGCTTACTAGGTTGCTAGAGCAGATAGGATGCAGAGGAGGGCTCCTTGAGCCAAATGCAAGATGA 1056 0.4678 MKERQRWRAEEDALLRSYVKQYGPREWNLVSQRMNTTLNRDAKSCLERWKNYLKPGIKKGSLTEEEQRLVIRLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQRENKELNRIPDPINNSKYEHILESFAEKLVKEQHPSPSFVMAASNGPFLRTDTAAPASALLPSWLSNSSSAAAAGPSSLSVTLSLSSSTVAAPPFSWLQPDRGPDNVPFVLGNIQAFSENMLISQMMEHCKELEEGQRALGAHKKEAGWRLSRVELQLESEKASRRREKMEEFEAKIKALQEEERAALGRIEAEYREELAALKRDAENKEQKLAEQWAAKHLQLTRLLEQIGCRGGLLEPNAR 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g01523 351 Coils Coil 300 324 - -
Phco1g01523 351 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 53 IPR017930 -
Phco1g01523 351 SMART sant 58 106 IPR001005 -
Phco1g01523 351 SMART sant 3 55 IPR001005 -
Phco1g01523 351 FunFam MYB-related transcription factor 4 58 - -
Phco1g01523 351 SUPERFAMILY Homeodomain-like 4 98 IPR009057 -
Phco1g01523 351 ProSiteProfiles Myb-like domain profile. 54 104 IPR001005 -
Phco1g01523 351 CDD SANT 6 53 IPR001005 -
Phco1g01523 351 Gene3D - 62 128 - -
Phco1g01523 351 ProSiteProfiles Myb-like domain profile. 1 53 IPR001005 -
Phco1g01523 351 Gene3D - 4 58 - -
Phco1g01523 351 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 54 108 IPR017930 -
Phco1g01523 351 Pfam Myb-like DNA-binding domain 7 67 - -
Phco1g01523 351 PANTHER PROTEIN ROUGH SHEATH 2 HOMOLOG 1 343 - -
Phco1g01523 351 Coils Coil 271 298 - -
Phco1g01523 351 CDD SANT 63 104 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g01523 Phco-Chr1 51852398 51853453 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Phco1g01523 Myb_DNA-bind_6 2e-14 CL0123