Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Phco1g01488 | ATGATTGTTGCAATGGACTTGAATGCCTCGCCAGTTCCAGAGGAAGATGAAGATATTTTTGAAGAGAAGATACATGTTGAAGAGTTTCATGCACCTGAAGAACGCATAGAAACTGGAGCTGATATAGCACGCCGGGAGCGTGAAGAAAGAAAGAGACGGTTGAAGAGAGAACGACCCGATGACAGACCTGTTCATGTGTCACAGTCACCAGGATATGATCAGCTATTTCCCGCTAAGAACCTTAAATCATATGATAAAAGCAGGCTGCCTCCAGGGTGGTTGGATTGTCCTTCATTTGGCCAGGAAATTTTTTGCATGATACCTTCCAAGGTTCCACTTGGTGAATCTTTCAGTGATTGTATTCTTCCTGGTAAAAGATATTCATTTAAACAAGTGATACATCAACAGAGAGTTTTAGGGAGAAAACTTGGCCTGGTGATTGATTTGACAAATACCTCTCGATACTATCCTGTGTCTGATTTGAAAAAAGAGTGCATCAAGCATGTTAAGATTCAATGCAGGGGGCGTGATTCTGTACCTGATAATTTAGCTGTGAACCAGTTCGTCTATGAGGTTACACAATTTTTGTTACGTCAAAAACACCCAAAGAAGTATATACTTGTTCATTGTACACATGGACATAATCGTACAGGGTACATGATCATCCACTATCTAATGCGTGCCATGTCCATGTCTGTTACTCAGGCAATAAAAATATTTTCTGAAGCTCGTCCTCCTGGAATCTACAAACCTGATTATATTGATGCATTATACGCATTTTATCATGAGAAAAGGCCTGAAATGGTAGTTTGTCCTCCCACTCCTGAATGGAAGAGGTCTTCAGAATTTGATCTCAATGGTGAAGCTGTTCCAGATGATGATGATGATGGAGTACCTGGTCCTGATTTGCAGGAGAACCATGAGACAGACACGCGAATGACAAATGATGATGTTTTAGGAGATGAGATTCCTTCTGATCAGCAGGATGCATTGCGTCAGTTCTGTTATCAAACACTTAAATTGGGTGTTGGGGCTAGGGGACACACACAGTTTCCAGGTTCACACCCAGTTTCTCTCAACAGGGAAAATTTACAATTGTTACGACAACGCTACTATTATGCAACATGGAAAGCAGATGGTACAAGATACATGATGCTAATAACAATGGATGGATGTTACTTAATTGATAGAAGTTTTAATTTTCGAAGGGTTCAAATGAGGTTTCCTTGCAGGAGTACTAATGAGGGTTTGGGCGAGAAAACCCACCACTACACATTGCTTGATGGTGAGATGGTTATTGATACGTTGCCAGATTCACAGAAGCAGGAGAGAAGATATCTTATATATGATATGATGGCAATCAACCAAGTGTCGATAATAGAGCGACCCTTCTATGAAAGGTGGAAGATGCTTGAGAAAGAAGTGATTGAACCTAGGAATCATGAACGGCACGATATATATCAGAGCAGAAATCCTTACTACAGATATGATCTGGAACCATTCAGGGTGAGGAGGAAAGATTTCTGGTTGCTCTCTACTGTCACAAAGCTTTTAAAGGAATTCATTAAAAGACTCTCACATGAGGCAGATGGTCTCATATTTCAGGGTTGGGATGATCCTTATATACCACGGACTCATGAAGGACTATTGAAGTGGAAATATGCTTATCTGAATTCAGTTGATTTTCTTTTTGAGGTTGATGGTGATCGTGAGATGCTTTTTCTCTATGAACGAGGAAAGAAGAAACTCTTGGAAGGGAATAGGGTTGAATTCACAGATGGCTTAGATCCCTCACATTATTCTGGAAAGATCATAGAATGTTCATGGGATTTTGATAAACTGGAATGGAAGTATATGCGTATCAGAACAGATAAATCAACTCCGAATGAGTTCAATACTTATAGGAAGGTGATGCGAAGCATAAGAGACAACATCACAGAGGAAGATTTGTTGAATGAAATAAGTGAGATTATCCGCCTTCCAATGTATGCTGACAGGATAAGAAATGACAGTAAAGCAAATCAGCATGCTAATGTGGCAAGGCGAAGGTGA | 2052 | 0.4016 | MIVAMDLNASPVPEEDEDIFEEKIHVEEFHAPEERIETGADIARREREERKRRLKRERPDDRPVHVSQSPGYDQLFPAKNLKSYDKSRLPPGWLDCPSFGQEIFCMIPSKVPLGESFSDCILPGKRYSFKQVIHQQRVLGRKLGLVIDLTNTSRYYPVSDLKKECIKHVKIQCRGRDSVPDNLAVNQFVYEVTQFLLRQKHPKKYILVHCTHGHNRTGYMIIHYLMRAMSMSVTQAIKIFSEARPPGIYKPDYIDALYAFYHEKRPEMVVCPPTPEWKRSSEFDLNGEAVPDDDDDGVPGPDLQENHETDTRMTNDDVLGDEIPSDQQDALRQFCYQTLKLGVGARGHTQFPGSHPVSLNRENLQLLRQRYYYATWKADGTRYMMLITMDGCYLIDRSFNFRRVQMRFPCRSTNEGLGEKTHHYTLLDGEMVIDTLPDSQKQERRYLIYDMMAINQVSIIERPFYERWKMLEKEVIEPRNHERHDIYQSRNPYYRYDLEPFRVRRKDFWLLSTVTKLLKEFIKRLSHEADGLIFQGWDDPYIPRTHEGLLKWKYAYLNSVDFLFEVDGDREMLFLYERGKKKLLEGNRVEFTDGLDPSHYSGKIIECSWDFDKLEWKYMRIRTDKSTPNEFNTYRKVMRSIRDNITEEDLLNEISEIIRLPMYADRIRNDSKANQHANVARRR | 683 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Phco1g01488 | 683 | SMART | dsp_5 | 117 | 263 | IPR020422 | GO:0006470|GO:0008138 | |
| Phco1g01488 | 683 | MobiDBLite | consensus disorder prediction | 30 | 64 | - | - | |
| Phco1g01488 | 683 | PIRSF | mRNA_capping_HCE | 76 | 683 | IPR017074 | GO:0004484|GO:0006370|GO:0140818 | |
| Phco1g01488 | 683 | Gene3D | Protein tyrosine phosphatase superfamily | 66 | 284 | IPR029021 | - | |
| Phco1g01488 | 683 | FunFam | mRNA capping enzyme, putative | 314 | 551 | - | - | |
| Phco1g01488 | 683 | PANTHER | MRNA-CAPPING ENZYME | 84 | 665 | - | - | |
| Phco1g01488 | 683 | MobiDBLite | consensus disorder prediction | 30 | 73 | - | - | |
| Phco1g01488 | 683 | FunFam | mRNA capping enzyme family protein | 85 | 299 | - | - | |
| Phco1g01488 | 683 | FunFam | mRNA capping enzyme family protein | 552 | 660 | - | - | |
| Phco1g01488 | 683 | SUPERFAMILY | (Phosphotyrosine protein) phosphatases II | 89 | 279 | IPR029021 | - | |
| Phco1g01488 | 683 | Gene3D | - | 589 | 660 | IPR012340 | - | |
| Phco1g01488 | 683 | SUPERFAMILY | Nucleic acid-binding proteins | 557 | 668 | IPR012340 | - | |
| Phco1g01488 | 683 | Pfam | Dual specificity phosphatase, catalytic domain | 141 | 261 | IPR000340 | GO:0008138|GO:0016311 | |
| Phco1g01488 | 683 | ProSiteProfiles | ATP-dependent DNA ligase family profile. | 437 | 581 | IPR012310 | GO:0003910|GO:0005524|GO:0006281|GO:0006310 | |
| Phco1g01488 | 683 | MobiDBLite | consensus disorder prediction | 285 | 315 | - | - | |
| Phco1g01488 | 683 | ProSitePatterns | Tyrosine specific protein phosphatases active site. | 208 | 218 | IPR016130 | GO:0016311|GO:0016791 | |
| Phco1g01488 | 683 | SUPERFAMILY | DNA ligase/mRNA capping enzyme, catalytic domain | 316 | 554 | - | - | |
| Phco1g01488 | 683 | Pfam | mRNA capping enzyme, C-terminal domain | 558 | 651 | IPR013846 | - | |
| Phco1g01488 | 683 | ProSiteProfiles | Dual specificity protein phosphatase domain profile. | 116 | 267 | IPR020422 | GO:0006470|GO:0008138 | |
| Phco1g01488 | 683 | CDD | RNA_5'-triphosphatase | 92 | 258 | - | - | |
| Phco1g01488 | 683 | Pfam | mRNA capping enzyme, catalytic domain | 355 | 553 | IPR001339 | GO:0004484|GO:0005524|GO:0006370 | |
| Phco1g01488 | 683 | ProSiteProfiles | Tyrosine specific protein phosphatases domain profile. | 186 | 255 | IPR000387 | GO:0016311|GO:0016791 | |
| Phco1g01488 | 683 | Gene3D | DNA ligase/mRNA capping enzyme | 314 | 553 | - | - | |
| Phco1g01488 | 683 | CDD | Adenylation_mRNA_capping | 326 | 554 | IPR001339 | GO:0004484|GO:0005524|GO:0006370 | |
| Phco1g01488 | 683 | MobiDBLite | consensus disorder prediction | 300 | 315 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Phco1g01488 | Phco-Chr1 | 51051097 | 51069995 | Dispersed/Wgd |