Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g01486 ATGTTGCATTTGGAAAGGATGCACATGAGAATAAATATAATTAATTTTTTCATCTTCCTCGGTACCCTCCGTTTCCCACCACACACTCACGACATCTGCATTCCTACGGCGAACCGCCGCACTTCCATAAAAAAGCCACAAAACCCATTCTCCATCTGCTTCTCCACAGAACCTCCTTCCGCCTTTGCTCCACCACGGAATCGATTCTCTGCAAGAATCAAGCTCTGTGAAGAAGGAAAGTACATAATTCAAATTAAAATAGTTAGTTACCTTCAAGTGAGAAGGTATGTGTACCATGACGTGGTTCGATTGGGTGATCTAAAGCTCCTCAATTGCTCAAATATTCAGCCATACGCCATTAGTGACGATACCAAATTGATATTTTTAAATCAGAGGCCACAGTCAAGTAATTTGGGAGCATCCATTGCAGAAGTTGCACAGGATGCTCTTGTAGCAGAGTATGACAAGAAGCATAAAATTGGTGGCCTGCAGGCATATGCATTCATGTCATTAGCTGCAGTCTCAAGGCTCATGCGGTTTGGCTTTTGTTGTGGTCTATATGAAGATAAAGGTGCTGATGCTAAATTCAGTTATCCAAGGGAACTTTTATTTGTTTCGACCATAATGGTGTACTGCAGTCACTGTGCCAAAAATGTAGCTGGGGAGCGACTAGATGACTGTTTCTTATGTTGTGGAAGCTGTGGGAGGGTGTTGGAAGATTACTTTTTTGCTGAGGAGCCTACATTTGTCAAGAATGCGGCAGGGCAGAGTAAATTATCAGGTAATTATGTAAGAACAGTTCAAAGCGAGTTCTCTGAGTCACGTCAAAGGACTTTAGATAGAGCTTATGATGAAATTAAATATCTAAGTATGGGCCTTGGAGTTCATGATGAACATATGGCTGACCAAGCATTGACCTTTTATAAAATAGCGCTTGAGCGAAATTTCACCCGTGGACGTAAATCAGAGCAAGTACAGGCTGCTTGTCTCTATATTGCATTTCGGCACAACAATAAGCCGTACCTTCTTATTGATTTTTCAATTTTTTTAAGAATAGATGTTTATGTGCTAGGATCAGTTTTCTTGCAGCTTTGTGAAGTGTTGCGGCTTGGAGAGCACCCAATTGTTCAAAAGCCTGTTGATCCTAGTCTTTTTATTCATAGATATACTATAAATTTGATTAAGCGAGGGAGTAAGGCAGTATCTGATACTGCACTGACCATTGTTGCAAGCATGAAACGGGACTGGATGCAGACAGGTAGGAAACCTAGTGGTCTATGCGGTGCGGCAATATACATTTCTGCTCTTGCACATGGAATTAAATGCTCTAAACCCGATATTCTTAGAATCGTCCATGTGTGTGAAGCAACATTGACCAAACGATTGGTTGAATTTGAAAATACGGAATGCTCTAGCTTGACAGTTGAGGAGTTGGATACCATGGCAAAGGAGCATGAAAAAAATCCAACGGTAATGGCAGAAGGTGAATTGAAAGGGTGTATTTCAAAAGATCTACTATGTGAGCACAAGGATAGTGGGGCATCCCATTTTGCTCTTGGATTGTGCGAAGCATGCTATAAGGATTTCGATAAGCTCTCTGGTGGACTTGGTGGTGGTTTGGATCCTCCTGCATTCCAGCGTGCTGAGCAGGAAAGAATGAAAAGAGCACTTCTCAAAGAGAGTGTTGATGAAGCATGCGATTTAGCGAATGCATCAAATGATCAGTTTAAGAGCCACCCAGAACATTTGCCTGCCTGTGTGCCAGAAGGTGCTAATGTTGCCCATGAGGCCATTAAAGATGGTAAATATGAATATGATGATTCATTTAGAGAAGATGAATCAGAAACTTTATCTGATATTGATGATCAAGACGTTGATTTATACATTCATGATGAGGAGGGGAGACATATCAAGAAGATACTATGGGAAGCAGCAAATCGGGAGTATCTTGAGGAGCAAGCAGCCAAGGAAGCAATTGCAGCAGCTAATAAGAAAGCTTTTGAGGCAAATTTTGAGAACTGTTCAGAGGATTTACTTGCAGCAAGAGAGCTTGCTGCATCTGCTTCTGAGGCTGTGGCAAAATCCAGAAAGGAAATGAAACAGAGACGAGCCAATGAGGCAAAAAATATGGGGCCAGCTCAATCTGCTGCGGAGGCCTTCGGCCAAATGTCTAATAAAAAAAGGCAATTGCAGAGTCTGAAATCTAAAGTCAATTTTGATCGCCTGGGTGAATTATTTAATGAACTGGAGAAAACCGATGATCTCAAGAAAGAGAAGAAAGCACGGTTGGATCCGCCCCTAGATAATCATGACAACTTACAGTCATTTGAGGACAAGAATGACGATGAGATGGGATCAGTGGATGAATTAGAAGATGATACGGGGGAGATGTATCAAAATGGGTTGTCCACTGATAATATTGCAGATGCATATTACCCTGAGGATGATGGATACGGCTATAACGATGATGATTATTACTGA 2481 0.4156 MLHLERMHMRINIINFFIFLGTLRFPPHTHDICIPTANRRTSIKKPQNPFSICFSTEPPSAFAPPRNRFSARIKLCEEGKYIIQIKIVSYLQVRRYVYHDVVRLGDLKLLNCSNIQPYAISDDTKLIFLNQRPQSSNLGASIAEVAQDALVAEYDKKHKIGGLQAYAFMSLAAVSRLMRFGFCCGLYEDKGADAKFSYPRELLFVSTIMVYCSHCAKNVAGERLDDCFLCCGSCGRVLEDYFFAEEPTFVKNAAGQSKLSGNYVRTVQSEFSESRQRTLDRAYDEIKYLSMGLGVHDEHMADQALTFYKIALERNFTRGRKSEQVQAACLYIAFRHNNKPYLLIDFSIFLRIDVYVLGSVFLQLCEVLRLGEHPIVQKPVDPSLFIHRYTINLIKRGSKAVSDTALTIVASMKRDWMQTGRKPSGLCGAAIYISALAHGIKCSKPDILRIVHVCEATLTKRLVEFENTECSSLTVEELDTMAKEHEKNPTVMAEGELKGCISKDLLCEHKDSGASHFALGLCEACYKDFDKLSGGLGGGLDPPAFQRAEQERMKRALLKESVDEACDLANASNDQFKSHPEHLPACVPEGANVAHEAIKDGKYEYDDSFREDESETLSDIDDQDVDLYIHDEEGRHIKKILWEAANREYLEEQAAKEAIAAANKKAFEANFENCSEDLLAARELAASASEAVAKSRKEMKQRRANEAKNMGPAQSAAEAFGQMSNKKRQLQSLKSKVNFDRLGELFNELEKTDDLKKEKKARLDPPLDNHDNLQSFEDKNDDEMGSVDELEDDTGEMYQNGLSTDNIADAYYPEDDGYGYNDDDYY 826
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g01486 826 MobiDBLite consensus disorder prediction 753 826 - -
Phco1g01486 826 FunFam Transcription factor IIIB 90 kDa subunit 271 374 - -
Phco1g01486 826 SMART cyclin_7 384 467 IPR013763 -
Phco1g01486 826 SMART cyclin_7 284 366 IPR013763 -
Phco1g01486 826 FunFam Transcription factor IIIB subunit 381 470 - -
Phco1g01486 826 Coils Coil 773 793 - -
Phco1g01486 826 PANTHER TRANSCRIPTION INITIATION FACTOR IIB-RELATED 210 733 IPR000812 GO:0006352|GO:0070897
Phco1g01486 826 Gene3D Single helix bin 611 659 - -
Phco1g01486 826 MobiDBLite consensus disorder prediction 753 781 - -
Phco1g01486 826 Gene3D - 381 471 - -
Phco1g01486 826 Pfam Transcription factor TFIIB repeat 276 365 IPR013150 GO:0017025
Phco1g01486 826 Pfam Transcription factor TFIIB repeat 378 467 IPR013150 GO:0017025
Phco1g01486 826 Gene3D - 271 372 - -
Phco1g01486 826 Pfam PLATZ transcription factor 94 231 IPR006734 -
Phco1g01486 826 CDD CYCLIN_TFIIIB90_rpt2 378 468 - -
Phco1g01486 826 MobiDBLite consensus disorder prediction 694 727 - -
Phco1g01486 826 SUPERFAMILY Cyclin-like 380 472 IPR036915 -
Phco1g01486 826 SUPERFAMILY Cyclin-like 282 370 IPR036915 -
Phco1g01486 826 CDD CYCLIN_TFIIIB90_rpt1 278 368 - -
Phco1g01486 826 PRINTS Transcription initiation factor IIB signature 327 346 IPR000812 GO:0006352|GO:0070897
Phco1g01486 826 PRINTS Transcription initiation factor IIB signature 421 437 IPR000812 GO:0006352|GO:0070897
Phco1g01486 826 PRINTS Transcription initiation factor IIB signature 224 244 IPR000812 GO:0006352|GO:0070897
Phco1g01486 826 Pfam Brf1-like TBP-binding domain 618 747 IPR011665 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g01486 Phco-Chr1 50977543 50998405 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF PLATZ Phco1g01486 PLATZ 2.5e-09 No_clan