Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g01411 ATGGCTTCAACTCCCCGCACCGTCGAAGAGATCTTCAAGGATTACACCGCTCGGAGAACCGCCATCGTTCGCGCTCTCTCTCAAGATGTTGATGAATTCTACGGACTCTGTGATCCAGATAAGGAGAACTTGTGCCTCTATGGACATCCAAATGAGACTTGGGAGGTGACTTTGCCAGCGGAGGAAGTTCCGCCCGAGCTTCCGGAGCCTGCGCTTGGAATCAATTTTGCTAGGGATGGCATGAACCGCAGGGACTGGCTTTCTCTGGTTGCTGTGCACAGTGATTCGTGGCTGCTTTCTGTGGCTTTTTATCTTGGAGCTCGTCTTAACCGCAATGAAAGGAAACGTTTGTTTGGCTTGATAAATGATCTTCCTACTGTTTTTGAAGTTGTGACTGAGAGGAAACCAGTAAAGGACAAGCCCACTGCAGACAGTGGAAGCAAATCTAGGGGCAGCACCAAGAGATCAAGTGATGGGCAAGTTAAAAGCAACCCGAAGTTTGCAGATGAAGGTTTTGCAGAGGAGGATGACGAGCATAGTGAAACCCTGTGTGGGAGCTGTGGCGGAAATTACAACGCAGATGAATTTTGGATTGGTTGTGACATATGTGAGAGGTGGTTCCATGGTAAATGTGTGAAGATTACTCCTGCAAAAGCTGAGAGCATAAAGCAATACAAATGTCCATCATGCAGCTTGAGGCGGGGAAGGCCCTAA 714 0.4846 MASTPRTVEEIFKDYTARRTAIVRALSQDVDEFYGLCDPDKENLCLYGHPNETWEVTLPAEEVPPELPEPALGINFARDGMNRRDWLSLVAVHSDSWLLSVAFYLGARLNRNERKRLFGLINDLPTVFEVVTERKPVKDKPTADSGSKSRGSTKRSSDGQVKSNPKFADEGFAEEDDEHSETLCGSCGGNYNADEFWIGCDICERWFHGKCVKITPAKAESIKQYKCPSCSLRRGRP 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g01411 237 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 173 231 IPR013083 -
Phco1g01411 237 ProSiteProfiles Zinc finger PHD-type profile. 181 233 IPR019787 -
Phco1g01411 237 CDD PHD_AL_plant 183 233 IPR044104 -
Phco1g01411 237 SUPERFAMILY FYVE/PHD zinc finger 174 235 IPR011011 -
Phco1g01411 237 Pfam Alfin 7 132 IPR021998 GO:0006355|GO:0042393
Phco1g01411 237 ProSitePatterns Zinc finger PHD-type signature. 184 230 IPR019786 -
Phco1g01411 237 Pfam PHD-finger 184 231 IPR019787 -
Phco1g01411 237 MobiDBLite consensus disorder prediction 146 163 - -
Phco1g01411 237 PANTHER CPG BINDING PROTEIN 4 236 IPR045104 GO:0006355|GO:0042393
Phco1g01411 237 SMART PHD_3 183 231 IPR001965 -
Phco1g01411 237 MobiDBLite consensus disorder prediction 135 166 - -
Phco1g01411 237 FunFam PHD finger alfin-like protein 176 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g01411 Phco-Chr1 47308422 47311090 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Phco1g01411 Alfin 1.9e-67 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g02210 3 48354123 48357486 Phco1g01411 1 47308422 47311090 PCT