Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g01367 ATGGATTACACTCACCCTGCCTCATCTGCAGGATCCTCTTCAAAGACAAACAGAAGCAAGGAGAAAAAGGGTGCTAAGAAATGCAAAGGAGTGAGGCTCTCCACCGATCCTCAAAGCGTGGCAGCAAGAGAACGAAGGCACAGAATCAGTGAACGGTTCAAGATCTTGCAGAGCATGGTCCCTGGTGGAAGCAAGATGGACACAGTATCCATGCTGGAGGAAGCCATTCAGTATGTGAAGTACCTCAAAACTCAGATTTGGCTCCACCAAACCATGATCAATTTCTTTAATGATAACGACTCACTTTCTCCTATGTATCTTAGTGGTTGCTACTTCCCTTCTGACCCTTCTGAACACTTCATTTCCCCTCAGCAAGATCCACAGCTTGATCATAGCATGCACAATTTTCCTCATCTGCCACAACCACAATGCAGCTTCCATGGTGAAGACACAACCTACTTTGATGCCTCTTTAAAATATTGGCCTGCTTAA 492 0.4533 MDYTHPASSAGSSSKTNRSKEKKGAKKCKGVRLSTDPQSVAARERRHRISERFKILQSMVPGGSKMDTVSMLEEAIQYVKYLKTQIWLHQTMINFFNDNDSLSPMYLSGCYFPSDPSEHFISPQQDPQLDHSMHNFPHLPQPQCSFHGEDTTYFDASLKYWPA 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g01367 163 MobiDBLite consensus disorder prediction 1 15 - -
Phco1g01367 163 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 38 92 IPR036638 GO:0046983
Phco1g01367 163 Pfam Helix-loop-helix DNA-binding domain 43 83 IPR011598 GO:0046983
Phco1g01367 163 FunFam Transcription factor LAX PANICLE 36 99 - -
Phco1g01367 163 MobiDBLite consensus disorder prediction 1 45 - -
Phco1g01367 163 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 33 82 IPR011598 GO:0046983
Phco1g01367 163 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 21 144 IPR045843 GO:0003700|GO:0006355
Phco1g01367 163 CDD bHLH_AtIND_like 34 93 - -
Phco1g01367 163 Gene3D - 37 91 IPR036638 GO:0046983
Phco1g01367 163 SMART finulus 39 88 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g01367 Phco-Chr1 38753839 38754330 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phco1g01367 HLH 2e-08 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g02259 3 48997165 48997662 Phco1g01367 1 38753839 38754330 PCT