Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g01339 ATGGGGGCTCGTTGCTCTAAATTCTCTTTCTGCTGGTTCCACTCCCACCTCAAGCCTTCTGTCCTTGAGTCATCTGACCAAGAAAATGGTGAGAAGGGTGAGAGAAAATTGTGGCCTAGTTTTGGTGAGTTCAGTTTGGAGCAACTGAAGGCTGCCACAAATGGGTTCTCCTCAGAAAACATAGTGTCTGAGCATGGTGAGAAAGCTCCCAATGTTGTATACAAAGGAAAGCTTGATAATGGACAGTGGATCGCCATCAAACGTTTCAACAAGTTTGCTTGGCCTGATTCTCGCCAATTCCTAGAGGAAGCCAAACAAGTGGGGAGCCTTAGAAGCGAACGCCTAGCAAATTTGATTGGTTATTGCTATGAAGGGGAAGAGAGGCTGCTAGTAGCAGAGTTTATGCCACATGAAACTCTGGCCAAGCATCTCTTTCATTGGGAGGCACAGCCAATGAAGTGGGCCATGAGATTGAGGGTGGCTTTCTACTTAGCTCAAGCTCTAGAATATTGCACTAGTAAAGGAAGGGGCTTGTATCATGATCTGAATGCCTACAGGATCTTGTTTGATCAGGATGCTAATCCCAGGTTGTCTTGCTTTGGACTGATGAAGAACAGCAGAGATGGCAAGAGTTACAGTACAAACTTGGCTTTCACCCCTCCTGAGTACTTACGGACTGGTAGAGTGACCCCAGAGAGCGTGGTTTACAGTTTTGGAACTCTGCTGCTAGATCTCTTGAGTGGTAAACATATTCCACCAAGCCACGCACTTGATCTGATTCGTGGCAAAAACTTTCTGATGTTGATGGATTCTGCCTTAGAAGGTCACTTTTCAAAGGATGATGGAACTGAGTTGGTTCGTTTGGCTTCTCGTTGTTTGCAATATGAAGCTCGAGAGAGGCCAAATGCGAAGTCTCTGGTTACGTCTCTTATGTCACTTCAGAAAGAAACAGAGGTCCCCTCATATGTTCTGATGGGTCTCAGGCAAGAAACTGCATCCTCAACAAAGCAATTGTCATTAACACCTTTTGGTGAAGCTTGTTTGAGACTTGATCTTACTGCAATCCATGAAATATTGGAGAAGACTGGTTACAAGGACGATGAAGGAATTGCCAATGAGCTTTCCTTTCAATTGTGGACCAGTCAAATGCAGGAAACCTTGAATTTGAAGAAGCATGGCGATACTGCTTTTCGAGCTAAAGACTTTGTCACTGCCATTGACTGCTACACTCAATTCATAGATGGAGGGACCATGGTATCACCAACAGTGTATGCAAGGAGATGCTTATCTTATTTGATGAATGAGATGGCACAAGAAGGTCTTGGGGATGCCATGCAAGCCCAAGTGGTATCTCCTGAGTGGCCTACTGCTTTGTATCTTCAAGCAGCTTGTCTTTTCAGCCTTGGAATGGAGAATGATGCTCAAGAGACTCTCAAAGATGGGACTAACATGGAAGCCAGAAAAAACAAAAACTGA 1476 0.4472 MGARCSKFSFCWFHSHLKPSVLESSDQENGEKGERKLWPSFGEFSLEQLKAATNGFSSENIVSEHGEKAPNVVYKGKLDNGQWIAIKRFNKFAWPDSRQFLEEAKQVGSLRSERLANLIGYCYEGEERLLVAEFMPHETLAKHLFHWEAQPMKWAMRLRVAFYLAQALEYCTSKGRGLYHDLNAYRILFDQDANPRLSCFGLMKNSRDGKSYSTNLAFTPPEYLRTGRVTPESVVYSFGTLLLDLLSGKHIPPSHALDLIRGKNFLMLMDSALEGHFSKDDGTELVRLASRCLQYEARERPNAKSLVTSLMSLQKETEVPSYVLMGLRQETASSTKQLSLTPFGEACLRLDLTAIHEILEKTGYKDDEGIANELSFQLWTSQMQETLNLKKHGDTAFRAKDFVTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNEMAQEGLGDAMQAQVVSPEWPTALYLQAACLFSLGMENDAQETLKDGTNMEARKNKN 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g01339 491 Gene3D Phosphorylase Kinase; domain 1 31 134 - -
Phco1g01339 491 Pfam Protein tyrosine and serine/threonine kinase 73 310 IPR001245 GO:0004672|GO:0006468
Phco1g01339 491 FunFam probable serine/threonine-protein kinase At5g41260 136 327 - -
Phco1g01339 491 SUPERFAMILY TPR-like 387 488 IPR011990 GO:0005515
Phco1g01339 491 SUPERFAMILY Protein kinase-like (PK-like) 37 320 IPR011009 -
Phco1g01339 491 FunFam probable serine/threonine-protein kinase At4g35230 384 491 - -
Phco1g01339 491 Gene3D Transferase(Phosphotransferase) domain 1 136 327 - -
Phco1g01339 491 FunFam probable serine/threonine-protein kinase At4g35230 31 134 - -
Phco1g01339 491 ProSiteProfiles Protein kinase domain profile. 59 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco1g01339 491 Gene3D Tetratricopeptide repeat domain 383 491 IPR011990 GO:0005515
Phco1g01339 491 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 20 490 IPR045845 GO:0004672|GO:0009742
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g01339 Phco-Chr1 33198065 33201842 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Phco1g01339 PK_Tyr_Ser-Thr 1.8e-25 CL0016