Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g01335 ATGGAACCGGAGGAAACCGCCGTCACGGCCGTCCCCGCCTACGACGGAAGTGGCGACGAGGGAATGCTGGTGTTGGACGGCGGCGATGTCGGCGGCGGCAAGGACAGAGTGAAGGGCCCTTGGTCGCCGGAAGAGGACGCCATTCTGAGTCGTCTCGTTAGCAAGTTCGGCGCCAGAAACTGGAGCCTCATCGCGCGCGGGATCAGTGGAAGATCCGGCAAGTCGTGCCGCCTCCGGTGGTGCAACCAGCTCGACCCTTCCGTTAAGCGCAAGCCCTTCACCGATGAGGAGGACAGAATCATAGTTGCTGCTCATGCAATCCATGGGAACAAATGGGCAGCCATTGCCAGGCTTCTACCCGGAAGAACGGATAATGCCATTAAGAACCACTGGAATTCCACTCTGAGGCGTCGGGGAGTTGAACTTGATAAGATTAAATTAGAATCTGGTAACTTTATGGAAGATGCTAGCTTGGAGAAAGCAAAAGCATCCTCGGAAGACACTCTATCATGTGGGGATGTTTCTTTGAAATCCTCAGAAGGGAGAGATGTCAGTTCTGTGGAGATCATGGATGATAAATCTGATGGTAAAGCACAAGCTGAGGGCCAATTACCCCACAAAGTCAAGGATCCACCTACCCTTTTTCGGCCAGTAGCTCGTGTAAGTGCTTTCAACGTTTATCACTCGTATGATGTTATACAGCCCTCAACATCAATTCAAAGACCTGTCCCGATGCAAGGACCCATTTTACAATCTTCAAGACCAGATATGGAATTTTGTAGAATGCTTGAAGGAATTTGTTGTGACCAGGCAGTGCCTCACCAGTGTGGCCATGGTTGCTGTTCTGCTCCAAATGGTAGAAAGTCCGAAAGCTCTTTGTTGGGACCGGAATTCATTGAATTTTCTGAACCCCCATCTTTTCCAAATTTTGAGTTGGCTGCAATCGCTGCAGACATCAGTAACCTTGCTTGGCTTAAAAGTGGATTAGAGAATAGTAGTGTGAAAATTATGGGAAACACCTCTGGCAGTGCAATGTCTAATGGATCTCGAGTACATATTGGCCATTAG 1068 0.4944 MEPEETAVTAVPAYDGSGDEGMLVLDGGDVGGGKDRVKGPWSPEEDAILSRLVSKFGARNWSLIARGISGRSGKSCRLRWCNQLDPSVKRKPFTDEEDRIIVAAHAIHGNKWAAIARLLPGRTDNAIKNHWNSTLRRRGVELDKIKLESGNFMEDASLEKAKASSEDTLSCGDVSLKSSEGRDVSSVEIMDDKSDGKAQAEGQLPHKVKDPPTLFRPVARVSAFNVYHSYDVIQPSTSIQRPVPMQGPILQSSRPDMEFCRMLEGICCDQAVPHQCGHGCCSAPNGRKSESSLLGPEFIEFSEPPSFPNFELAAIAADISNLAWLKSGLENSSVKIMGNTSGSAMSNGSRVHIGH 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g01335 355 FunFam Transcription factor MYB44 92 138 - -
Phco1g01335 355 Gene3D - 37 89 - -
Phco1g01335 355 MobiDBLite consensus disorder prediction 191 211 - -
Phco1g01335 355 FunFam MYB transcription factor 38 89 - -
Phco1g01335 355 ProSiteProfiles Myb-like domain profile. 33 84 IPR001005 -
Phco1g01335 355 ProSiteProfiles Myb-like domain profile. 85 135 IPR001005 -
Phco1g01335 355 Gene3D - 92 138 - -
Phco1g01335 355 CDD SANT 92 135 IPR001005 -
Phco1g01335 355 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 33 88 IPR017930 -
Phco1g01335 355 SUPERFAMILY Homeodomain-like 35 131 IPR009057 -
Phco1g01335 355 PANTHER MYB PROTEIN-RELATED 38 186 - -
Phco1g01335 355 CDD SANT 40 82 IPR001005 -
Phco1g01335 355 SMART sant 37 86 IPR001005 -
Phco1g01335 355 SMART sant 89 137 IPR001005 -
Phco1g01335 355 Pfam Myb-like DNA-binding domain 41 98 - -
Phco1g01335 355 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 89 139 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g01335 Phco-Chr1 32954531 32976049 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Phco1g01335 Myb_DNA-bind_6 3e-16 CL0123