Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g01295 ATGGAGTTTGATCCATGCTTCCTTTCAAGTATTTTTCCCAAAAACCCCTACTTGAAGCCACACACTCAAAACATGTTTCCATCCCAAAGCTCCTTTCTCATCCCACCATCTCAACCCATCATGTTTCACCCTAGCCATGCTTTCCACCATTTTCAAGACCACATCGTGAATGTGCCTGAACACAACCCTCTGTTTGTGATGGACGGTTCCAACCCCATCACAACCCCCATGTATGGTAATGGGATACCAACCCCTTCTTTGGGTGATGGGTCTTCCCTAACAGGCTTTGTTAACATTAACAGCCACCAGCCTGTGATGTTAGCACCAAAGAACAACAACAAAATTGAAGCTTTGTATGACCACCATAAAGGCAAAGTCATATGGGATTTTTCCCAGAAAACCATGGTTCATCCTTTTGAAGCCTCTTCTTCCAAATCACCATCTCCTTTCTGTCTCTCTAATGAGTATGGATTGGGTATGAGTGAATTTCACAGGGACACTGATCCAAGGATGGTAGAGGTGGAAAAGAATATGAACAGTAATATAATCAAAGGGCAGTGGACTCCCGAAGAAGACAGTGCTCTTGTGGAGTTGGTGAATCAATTTGGACCGAAGAAATGGTCAGAAATTGCAAAGCTGATGTGCCGTAGAGTTGGAAAGCAATGTCGAGAAAGATGGCAAAATCATCTCCGGCCAAACATTAGGAAGGAGTCGTGGAGCCTGGAAGAAGACAAGATTCTGATCAAAGCCCACCAGGAATTTGGAAATAGGTGGTCAGAGATTGCGAAGAGGCTACCTGGAAGGACTGAAAATACTATTAAGAATCATTGGAATGGAACCAAGCGACGCCAGAGTCACAAGACATACAACAGGAATAAGAACAACCCTTACGAAGGATCAATGCTCCGTGCTTATGTTAAAAGGGTCACTGCTACTGAAGAATCTACAAAAGTGTTCAAGAAACCGTTAAGGAAAAAGAATAAGGTGTTGAGATCTAGTCGTGATGGGCTAGAACCTTTGTTGAGGTTTGATCGATGTACAAACGGAATGTTTATTGGAAGTGGCAGCAAGTACGCGCCAATGCAAGTTAAAAATAATGATGTTGGGGTTTCCCTTGCAATTGGAAAGAATGCAATGAACTAA 1143 0.4304 MEFDPCFLSSIFPKNPYLKPHTQNMFPSQSSFLIPPSQPIMFHPSHAFHHFQDHIVNVPEHNPLFVMDGSNPITTPMYGNGIPTPSLGDGSSLTGFVNINSHQPVMLAPKNNNKIEALYDHHKGKVIWDFSQKTMVHPFEASSSKSPSPFCLSNEYGLGMSEFHRDTDPRMVEVEKNMNSNIIKGQWTPEEDSALVELVNQFGPKKWSEIAKLMCRRVGKQCRERWQNHLRPNIRKESWSLEEDKILIKAHQEFGNRWSEIAKRLPGRTENTIKNHWNGTKRRQSHKTYNRNKNNPYEGSMLRAYVKRVTATEESTKVFKKPLRKKNKVLRSSRDGLEPLLRFDRCTNGMFIGSGSKYAPMQVKNNDVGVSLAIGKNAMN 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g01295 380 Gene3D - 238 280 - -
Phco1g01295 380 ProSiteProfiles Myb-like domain profile. 179 230 IPR001005 -
Phco1g01295 380 ProSiteProfiles Myb-like domain profile. 231 281 IPR001005 -
Phco1g01295 380 Pfam Myb-like DNA-binding domain 187 245 - -
Phco1g01295 380 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 179 234 IPR017930 -
Phco1g01295 380 SMART sant 235 283 IPR001005 -
Phco1g01295 380 SMART sant 183 232 IPR001005 -
Phco1g01295 380 CDD SANT 187 230 IPR001005 -
Phco1g01295 380 CDD SANT 238 278 IPR001005 -
Phco1g01295 380 Gene3D - 183 235 - -
Phco1g01295 380 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 235 285 IPR017930 -
Phco1g01295 380 SUPERFAMILY Homeodomain-like 181 277 IPR009057 -
Phco1g01295 380 FunFam Transcriptional activator Myb isoform A 183 236 - -
Phco1g01295 380 PANTHER MYB PROTEIN-RELATED 155 295 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g01295 Phco-Chr1 26657144 26662934 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Phco1g01295 Myb_DNA-bind_6 7e-18 CL0123