Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g01279 ATGAAGAATGCCAAGGGCAAGGGAGCAGTGAAGGTCTCAAAAGAAGCACTGAAGCCTGTTGATGACCGAAAGATTGGAAAGCGGAAGGCTTCTAGTAAGCCTGACAAGGGCAGTGCACCAAAGGCAAAGAAGGAGAAGGCCAAGAAAGACCCCAACAAGCCTAAAAGACCACCCAGTGCTTTCTTCGTGTTCCTTGAGGAGTTCAGGAAGACCTTTAAGGCCGAGAATCCTAATGTGAAGGCAGTGTCTGCTGTTGGGAAAGCTGGAGGAGAGAAATGGAAATCCCTGTCCAGTGCTGAAAAAGCTCCATATGAAGCCAAGGCTGCAAAAAGGAAAGTCGAGTATGAAAAACTTATGAAAGCTTATGATAAAAAGCAGGCAAGCTCCGCAGATGATGATGAATCAGACAAGTCCAAATCTGAAGTGAATGATGAAGATGATGAAGCCAGTGCAGAGGACCATCAAGAGGAGGATGAGGAAGAGGATGATGATGATGAGGAAGATGAGGATGATGACTGA 519 0.4624 MKNAKGKGAVKVSKEALKPVDDRKIGKRKASSKPDKGSAPKAKKEKAKKDPNKPKRPPSAFFVFLEEFRKTFKAENPNVKAVSAVGKAGGEKWKSLSSAEKAPYEAKAAKRKVEYEKLMKAYDKKQASSADDDESDKSKSEVNDEDDEASAEDHQEEDEEEDDDDEEDEDDD 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g01279 172 MobiDBLite consensus disorder prediction 86 110 - -
Phco1g01279 172 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 54 123 IPR009071 -
Phco1g01279 172 Pfam HMG (high mobility group) box 54 122 IPR009071 -
Phco1g01279 172 PRINTS High mobility group (HMG1/HMG2) protein signature 88 107 - -
Phco1g01279 172 PRINTS High mobility group (HMG1/HMG2) protein signature 107 127 - -
Phco1g01279 172 PRINTS High mobility group (HMG1/HMG2) protein signature 17 37 - -
Phco1g01279 172 MobiDBLite consensus disorder prediction 138 172 - -
Phco1g01279 172 MobiDBLite consensus disorder prediction 8 55 - -
Phco1g01279 172 SMART hmgende2 53 124 IPR009071 -
Phco1g01279 172 MobiDBLite consensus disorder prediction 1 58 - -
Phco1g01279 172 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 2 158 IPR031061 -
Phco1g01279 172 MobiDBLite consensus disorder prediction 122 137 - -
Phco1g01279 172 SUPERFAMILY HMG-box 39 123 IPR036910 -
Phco1g01279 172 Gene3D High mobility group box domain 37 139 IPR036910 -
Phco1g01279 172 MobiDBLite consensus disorder prediction 122 172 - -
Phco1g01279 172 CDD HMG-box_AtHMGB1-like 55 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g01279 Phco-Chr1 22816769 22818542 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Phco1g01279 HMG_box 2e-24 CL0114