Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g01245 ATGCCACATTCTCTGTTTCTCTTTCACTTTCTGCTTCTCATATTCCAAGTTTTGTTCAGTTTCATTCCCGCGCTTTCTCTCTCCTCCGACGGCCTCGCGCTTCTCGCTCTAAAGTCCGCCGTCGACCAGCCCTCCTCCGCCTTCTCCGACTGGAACGATGGCGACGTCACGCCCTGCGCCTGGTCGGGAATCGTTTGCGCCAATATCTCCGGCGAGGAGGATCCCCGCGTGGTCGGAATCTCCCTCGCCGGGAAATTCATCTCCGGCTACCTGCCATCGGAGCTCGGCACGCTGCGGTTCCTCCGCCGACTCAACCTCCACGACAATGCCTTCTCCGGCGTCCTCCCGGCGCAGCTCGCCAACGCCACCGCACTCCACAGCCTGTTCCTCCACCGCAACAACCTCTCCGGCCCCATACCCCGCTCCCTCTGTACCCTCCCGCGCCTCCAAAACCTCGACCTCTCTGAAAACGCATTCTCCGGCCACATTCCTGACCACCTCGGAAACTGCAAGAACCTCCAGCGCCTCATCGTCGCCGGCAACAGATTCTCGGGCGAGATTCCTGCCGGCGTGTGGCCGGAACTTCAGAACCTCCTCCAACTCGACCTCTCCGCGAACGAGTTAACCGGTTCAATCCCTGACGAAATCGGAACCCTAGTTTCCCTCTCTGGCACGCTGAACATCTCCTTCAACCACCTCTCCGGTAAGATTCCGGCATCGCTGGGAAAATTACCGGCGACGGTGAGCTTCGATTTCAAAAACAACAACCTCATCGGCGAAATTCCCCAAACGGGGTCGTTTTCAAACCAAGGTCCCACGGCGTTCCTTGGAAATCCTAACCTATGTGGGTTTCCTCTTAGAAAATCATGTTCCGGTTCAGACCGAGATTTTTCTCCCGGTTCGGATCAAAACAAACCGGTTAAACGGCCAAAGGGGTTGAGCCCCGGTTTAATTATTTTGATCTCCGCGGCTGATGCTGCTGTTGTGGCATTCATTGGGCTTGTGATTGTTTATGTGTATTGGAAGAAAAAAGATGATGAGAATGCTTGTAGTTGCATTAGGAGAAGAAAGTTTGGCGAAGAGAAAGGGAGTTGCATGTGCGGTGGATTCCCATGTGTTACTGGGGACAAAAGTGATGATGATGAAGATTATGAGGTGGAGGGGGCTGAGGGTGAGGGGGAAGGGGAATTGGTTAGGATTGATAAGGGATTGAATTTTGAACTTGATGAGTTGTTGAGGGCTTCTGCTTATGTGTTGGGGAAGAGTGGGTTGGGGATAGTGTATAAGGTGGTGTTGGGGAATGGGGTGCCTGTGGCTGTGAGGAGGCTGGGGGAGGGAGGGGAACAGAGGTATAAGGAGTTTGCTGCAGAGGTTATGGCCATTGGGAAGGTCAAGCACCCTAATGTTGTAAGGTTGAGGGCTTACTATTGGGCACATGATGAGAAACTTCTCATCAGTGATTTCATCTCCAATGGCAATCTGACACATGCCCTTAGAGGGAGAAATGGCCAACCATCTACAAATCTTTCATGGTTCACCAGGTTGAAAATCGCGAAAGGAATAGCGAGAGGCTTGGCGTATCTCCACGAATGTAGTCCAAGAAAGTTCGTCCATGCTGACATCAAACCCTCCAACATCCTACTTGACAACAACTTCCAACCTTACATTTCTGACTTTGGCCTAAACCGTCTGATCAGCATCACTGGCAACAACCCCTCCACCGGTGGATTAATGGGTGGAGCTCTTCCTTACATGAAGTCTTCCCAGAAAGAGAGAACCAACAATTACAAAGCCCCTGAGGCTAGTATCCCTGGCTGCAGGCCCACCCAGAAATGGGACGTGTACTCATTTGGAGTTGTGTTGCTTGAAATATTAACTGGAAGGTCACCAGAATCATCTCCCACCACATCAACTTCCATGGAAGTCCCTGACTTGGTAAGGTGGGTGAGGAAAGGGTTCGATCAAGAAAGCCCGTTATCTGAGATGGTTGATCCATCGCTGCTCCAAGAAGTGCGTGTTAAGAAAGAGGTGCTGGCTGTGTTTCATGTAGCTTTGGCTTGCACTGAAGGAGATCCTGAGGCTCGGCCAAGGATGAAAACTGTCTCTGAAAATCTTGATAAGATTGGAACGTAA 2133 0.5171 MPHSLFLFHFLLLIFQVLFSFIPALSLSSDGLALLALKSAVDQPSSAFSDWNDGDVTPCAWSGIVCANISGEEDPRVVGISLAGKFISGYLPSELGTLRFLRRLNLHDNAFSGVLPAQLANATALHSLFLHRNNLSGPIPRSLCTLPRLQNLDLSENAFSGHIPDHLGNCKNLQRLIVAGNRFSGEIPAGVWPELQNLLQLDLSANELTGSIPDEIGTLVSLSGTLNISFNHLSGKIPASLGKLPATVSFDFKNNNLIGEIPQTGSFSNQGPTAFLGNPNLCGFPLRKSCSGSDRDFSPGSDQNKPVKRPKGLSPGLIILISAADAAVVAFIGLVIVYVYWKKKDDENACSCIRRRKFGEEKGSCMCGGFPCVTGDKSDDDEDYEVEGAEGEGEGELVRIDKGLNFELDELLRASAYVLGKSGLGIVYKVVLGNGVPVAVRRLGEGGEQRYKEFAAEVMAIGKVKHPNVVRLRAYYWAHDEKLLISDFISNGNLTHALRGRNGQPSTNLSWFTRLKIAKGIARGLAYLHECSPRKFVHADIKPSNILLDNNFQPYISDFGLNRLISITGNNPSTGGLMGGALPYMKSSQKERTNNYKAPEASIPGCRPTQKWDVYSFGVVLLEILTGRSPESSPTTSTSMEVPDLVRWVRKGFDQESPLSEMVDPSLLQEVRVKKEVLAVFHVALACTEGDPEARPRMKTVSENLDKIGT 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g01245 710 SMART serkin_6 417 708 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco1g01245 710 Gene3D Ribonuclease Inhibitor 192 292 IPR032675 -
Phco1g01245 710 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 27 193 - -
Phco1g01245 710 Pfam Leucine rich repeat 101 158 IPR001611 GO:0005515
Phco1g01245 710 SUPERFAMILY L domain-like 28 287 - -
Phco1g01245 710 ProSitePatterns Serine/Threonine protein kinases active-site signature. 536 548 IPR008271 GO:0004672|GO:0006468
Phco1g01245 710 FunFam Os07g0541700 protein 491 579 - -
Phco1g01245 710 ProSiteProfiles Protein kinase domain profile. 413 708 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco1g01245 710 Gene3D Transferase(Phosphotransferase) domain 1 489 710 - -
Phco1g01245 710 Pfam Leucine rich repeat N-terminal domain 28 66 IPR013210 -
Phco1g01245 710 SMART LRR_typ_2 98 121 IPR003591 -
Phco1g01245 710 SMART LRR_typ_2 146 170 IPR003591 -
Phco1g01245 710 SMART LRR_typ_2 195 219 IPR003591 -
Phco1g01245 710 CDD STKc_IRAK 419 708 - -
Phco1g01245 710 FunFam Leucine-rich repeat receptor-like protein kinase 396 488 - -
Phco1g01245 710 FunFam Leucine-rich repeat receptor-like protein kinase 197 292 - -
Phco1g01245 710 SUPERFAMILY Protein kinase-like (PK-like) 418 704 IPR011009 -
Phco1g01245 710 Gene3D Phosphorylase Kinase; domain 1 404 488 - -
Phco1g01245 710 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 166 708 IPR046959 -
Phco1g01245 710 Gene3D Ribonuclease Inhibitor 27 191 IPR032675 -
Phco1g01245 710 Pfam Protein kinase domain 418 644 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g01245 Phco-Chr1 20220733 20224650 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Phco1g01245 Pkinase 9.4e-33 CL0016