Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g01230 ATGTGTGTTGATTCCTTTGCAGTTGATTGCGAGCAGACAAATTACGATCCAGAAGTAATTGAGGTTCCAAAAGGGAATTGCCTCCTCCCAACACCAAGGAAGGACATGGACCCGCCGTCCAAATCGCTGCTCAAACTTTCACTTTCCGTGAACTTTCGGTCGAACTCCTTTATAGGGGAGGGTGGATTTGGAAGGGTCTACAAAGGCAGGCTTGAAACCACTTTCAAACAGTTAGACAAAAATGGTCTACAGGGTAATCGGGAATTCCTTGTAGAGGTTCTCATGCTCAGTCTTCTGCATCACCCTAACCTTGTGAATCTCATTGGATACTGTGTGGATGGGGAACAACGCCTCCTTATTTATGAATTTATGGCTTTGGGATCATTGGAATATCACGTTCATGGAACATATGGCACAAATGGACCACCATCTAATTTGAACTGCATATAG 450 0.4422 MCVDSFAVDCEQTNYDPEVIEVPKGNCLLPTPRKDMDPPSKSLLKLSLSVNFRSNSFIGEGGFGRVYKGRLETTFKQLDKNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCVDGEQRLLIYEFMALGSLEYHVHGTYGTNGPPSNLNCI 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g01230 149 PANTHER OS07G0668900 PROTEIN 50 135 - -
Phco1g01230 149 ProSiteProfiles Protein kinase domain profile. 52 149 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco1g01230 149 SUPERFAMILY Protein kinase-like (PK-like) 51 137 IPR011009 -
Phco1g01230 149 Pfam Protein tyrosine and serine/threonine kinase 56 134 IPR001245 GO:0004672|GO:0006468
Phco1g01230 149 Gene3D Transferase(Phosphotransferase) domain 1 35 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g01230 Phco-Chr1 19707504 19709233 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Phco1g01230 PK_Tyr_Ser-Thr 4.3e-12 CL0016