Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g01223 ATGGGACACAACAGTTGTCATGTCAAAGATTTCTACACAGATCCTTTTCAGCATAACCTCTCTTTTGCTTCATATGGTCATAGGAGGAGGAGCCACAAAGGTGGCGGGGGTGGTGGTTTTATATGCTTAGCCTTTTTTGTGTTTCTTTTGCAAGCTTTGGCTTCTGCCATTCAGCCTGTTTCAGGGCAGTTGTGGGATGGGGTGGTTGTGACTCAAGCTGATTTTCAAGCCCTGAGAGCTATTAAGAATGAGCTAATTGACTTCAAAGGGGTTCTCAAGAGCTGGAATGATAGTGGTCTGGGTGCCTGTTCAGGGTGGGCAGGTATCAAGTGTGTGAATGGTGAGGTTATTGCAATTCAGCTTCCTTGGAGAGGGTTAGGAGGCAGGATCTCTGAGAAAATTGGCCAACTTCAGTCTCTTAGGAAGCTCAGTCTTCATGACAATGCTCTTGCTGGTCCAGTTCCTTTGTCACTTGGCCTCCTTCCTAACCTTAGAGGGGTTTATCTCTTTAATAACAAGCTTTCAGGTTCTATCCCTCCTTCCCTTGGCAATTGTCCAATGCTTCAGTCTCTTGATATTAGCAACAATTCCCTCAGTGGTAAAATCCCTCCCAGTTTAGCGAGATCTACTAGGATACTTAGGATCAATTTGAGCTTCAACTCACTTTCTGGATCCATTCCTAGCAGTTTAACTATGTCTCCTTCTCTAACCATTCTTGCCCTCCAACACAACAACCTCTCTGGCTCTATCCCAGATTCTTGGGGTGGAGCTGGAAAGAAGAAAGCTTCCCAGCTTCAAGTTTTGACCCTTGATCACAATCTCATTTCTGGAATCATCCCAGTTTCTCTAGGCAAGCTAGCTTTACTTGAAAATGTTTCTTTGAGTCATAACCTGATTGTAGGGCCTATTCCAAGTGAACTAGGTGCACTTTCTAGGCTTCAAATTCTTGATCTTTCAAACAATGCCATCAATGGCAGCCTTCCTGCTAGCTTCTCTAACCTCTCTTCTCTAGTTTCATTAAACCTTAATAGCAATCAACTTGCTAACCATATTCCAGATTCTTTGGATAGGTTGCACAACCTTTCTGTGCTTAACCTGAAGAACAATAAGCTTGATGGCCAAATCCCACCAACAATAGGGAACATCTCAAGCATTAGCCAAATTGATTTTTCTGAAAACAGATTAGTTGGAGGAATTCCAGATACCCTTACCAAACTTGCAAATCTCAGTTCATTCAACGTCTCTTACAACAACCTATCTGGTCCTGTCCCATCTCTACTTTCCAAAAGCTTCAATGCTAGCTCTTTTGTTGGAAATCTTGAGCTATGTGGGTACATCAGCTCAAAACCTTGCCCTTCACCCTCTCCTCATAATCTTCCAGCTCAATCACCACAGGCTCTTTCTAAGCCTCACCACCGCAAACTAAGCACCAAGGACATAATCCTCATAGTGGCAGGTGTTCTTCTGTTGATTCTGTTATTACTGTGCTGCTTTTTGTTGTGTTGTTTGATCAGGAGAAGAACTGCTTCAAGCAGAAAGAGTGGCAAAGCTGCTAAGGCTGCAGCATCTGCTAGAAGTGTTGAGAAAGGTATTTCAGCTGGTGGTGAGGTTGAATCAGGAGGTGAAGCTGGCGGGAAACTAGTTCACTTTGATGGGCCTTTTGTGTTTACTGCTGATGATCTTTTGTGTGCAACTGCGGAGATAATGGGAAAAAGTGCATATGGAACAGCATACAAAGCAACACTGGAAGATGGTAACCAAGTTGCTGTGAAGAGGTTGAGGGAAAAGACTACTAAAGGGCAGAAGGAGTTTGAAACTGAGGTTGCTGCACTTGGCAAAATCAGACACCCAAATCTCTTAGCACTTAGAGCTTACTATTTAGGACCAAAAGGAGAGAAGCTTCTTGTCTTTGATTACATGACAAAAGGAAGCCTAGCATCATTCCTTCACGCTCGTGGGCCTGAAATTGTTATTGAATGGCCAACAAGGATGAAGATAGTGATTGGAGTCACTAGGGGCTTGAGCTACCTCCATAGCCAAGAGAACATTGTACATGGGAACCTCACATCAAGCAACATACTATTGGATGAGCAAACAGAAGCCCACATAACAGATTTTGGTCTCTCAAGGCTGATGACAACTTCTGCCAACACCAACATCATTGCCACTGCAGGAAGCCTTGGATACAACGCACCAGAGCTTTCAAAGACCAAGAAGCCTAACACAAAGACTGATGTGTACAGTCTTGGTGTCATCATGTTGGAACTCCTAACTGGAAAGCCACCTGGAGAGCCAACCAATGGCATGGACTTGCCCCAATGGGTTGCCTCCATAGTGAAGGAAGAGTGGACTAATGAAGTGTTTGATTTGGAACTCATGAGGGATGCACCAGCCATAGGGGATGAATTGCTTAACACGTTGAAGTTAGCACTGCATTGTGTGGATCCATCTCCTTCTGCCAGGCCTGAAGTACACCTAGTTCTGCAGCAATTGGAGGAGATCAAACCAGAGTTGGCTGCAGGGGATGATGAAGCTACCAAGGTCCAAACAACTGAGTAA 2559 0.4431 MGHNSCHVKDFYTDPFQHNLSFASYGHRRRSHKGGGGGGFICLAFFVFLLQALASAIQPVSGQLWDGVVVTQADFQALRAIKNELIDFKGVLKSWNDSGLGACSGWAGIKCVNGEVIAIQLPWRGLGGRISEKIGQLQSLRKLSLHDNALAGPVPLSLGLLPNLRGVYLFNNKLSGSIPPSLGNCPMLQSLDISNNSLSGKIPPSLARSTRILRINLSFNSLSGSIPSSLTMSPSLTILALQHNNLSGSIPDSWGGAGKKKASQLQVLTLDHNLISGIIPVSLGKLALLENVSLSHNLIVGPIPSELGALSRLQILDLSNNAINGSLPASFSNLSSLVSLNLNSNQLANHIPDSLDRLHNLSVLNLKNNKLDGQIPPTIGNISSISQIDFSENRLVGGIPDTLTKLANLSSFNVSYNNLSGPVPSLLSKSFNASSFVGNLELCGYISSKPCPSPSPHNLPAQSPQALSKPHHRKLSTKDIILIVAGVLLLILLLLCCFLLCCLIRRRTASSRKSGKAAKAAASARSVEKGISAGGEVESGGEAGGKLVHFDGPFVFTADDLLCATAEIMGKSAYGTAYKATLEDGNQVAVKRLREKTTKGQKEFETEVAALGKIRHPNLLALRAYYLGPKGEKLLVFDYMTKGSLASFLHARGPEIVIEWPTRMKIVIGVTRGLSYLHSQENIVHGNLTSSNILLDEQTEAHITDFGLSRLMTTSANTNIIATAGSLGYNAPELSKTKKPNTKTDVYSLGVIMLELLTGKPPGEPTNGMDLPQWVASIVKEEWTNEVFDLELMRDAPAIGDELLNTLKLALHCVDPSPSARPEVHLVLQQLEEIKPELAAGDDEATKVQTTE 852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g01223 852 SUPERFAMILY L domain-like 110 451 - -
Phco1g01223 852 Pfam Leucine rich repeat N-terminal domain 73 111 IPR013210 -
Phco1g01223 852 SUPERFAMILY Protein kinase-like (PK-like) 567 835 IPR011009 -
Phco1g01223 852 Gene3D Ribonuclease Inhibitor 70 209 IPR032675 -
Phco1g01223 852 Gene3D Ribonuclease Inhibitor 210 320 IPR032675 -
Phco1g01223 852 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 257 455 - -
Phco1g01223 852 PRINTS Leucine-rich repeat signature 310 323 - -
Phco1g01223 852 PRINTS Leucine-rich repeat signature 188 201 - -
Phco1g01223 852 Gene3D Ribonuclease Inhibitor 321 453 IPR032675 -
Phco1g01223 852 Gene3D Transferase(Phosphotransferase) domain 1 641 850 - -
Phco1g01223 852 SMART LRR_typ_2 406 433 IPR003591 -
Phco1g01223 852 SMART LRR_typ_2 161 185 IPR003591 -
Phco1g01223 852 SMART LRR_typ_2 310 333 IPR003591 -
Phco1g01223 852 SMART LRR_typ_2 137 160 IPR003591 -
Phco1g01223 852 SMART LRR_typ_2 334 357 IPR003591 -
Phco1g01223 852 SMART LRR_typ_2 358 382 IPR003591 -
Phco1g01223 852 Pfam Protein tyrosine and serine/threonine kinase 567 831 IPR001245 GO:0004672|GO:0006468
Phco1g01223 852 CDD STKc_IRAK 569 834 - -
Phco1g01223 852 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 263 834 - -
Phco1g01223 852 Gene3D Phosphorylase Kinase; domain 1 569 640 - -
Phco1g01223 852 Pfam Leucine rich repeat 311 371 IPR001611 GO:0005515
Phco1g01223 852 ProSiteProfiles Protein kinase domain profile. 563 838 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco1g01223 852 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 72 224 - -
Phco1g01223 852 FunFam Pollen receptor-like kinase 1 640 845 - -
Phco1g01223 852 Pfam Leucine Rich Repeat 188 206 IPR001611 GO:0005515
Phco1g01223 852 FunFam Leucine-rich repeat receptor-like protein kinase 549 639 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g01223 Phco-Chr1 19419454 19422329 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Phco1g01223 PK_Tyr_Ser-Thr 2.1e-40 CL0016