Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g01167 ATGTCTTTCAGTTTCACTGACCTCCTTTCCAACAGCAATAGCTTGACCATGGATGATGATCCGTTTGGACTTGAATTTGCCAACACTTTCAAACAATTTCAACCTCTTTCACTACCTCTCCCTTCTTATTCAGAGTTCCCACCTGGTTTTGCCCCAACAACACAGTCATTGAACTCACCCCTCTTCTTTTCTTCTCAAAATGTTCCTGCATCTTACACAGCTGAGTCATCTTCCAGCATGAGCTTCAGCATGAGAAACAGTTCAACTGAGGACCAGATAGGAAACAAGGAGGAAGAGAGATACTGCTCTGACTTCTCTTTCCTAACAAAAACAAACCACGTGCCTCTCTTTCAATCTTCCACAAGCATGTTTGAAGTGGAGCCAGTAAAGAAACAGGACACAATGATATTGAATGAAGCTGCCAAGCAAACTGATTTCTCATCTGAGAGGACACAAACAAAATCTGAATATGCAATCACTCAGGGCTTCTCCACAGAAGTTGCCTCAATCAAACCTGAAATACAAAGCAATTCTACTTCTGTGTCTGTTCAATTTAACTCCAATAATGCTTTTAAGTCTATTAGAGAACAAAGGAAATCAGAAGATGGGTACAATTGGAGGAAGTATGGAGAGAAACAAGTGAAAGGAAGTGAGCATCCGCGCAGTTATTACAAGTGCACGTATCCAAATTGTCCAACAAAGAAGAAAGTTGAGAGGTCTTTGGAGGGACATGTTACTGAAATAGTATACAGGGGAAGTCACAATCATCCTAAGCCACATAATAGAAAAAATGGCTCTCAATCAATTCATCACACTTCTTCATCCTGCACCATCTCAGGGATTTCAGATCAGTCTATGGGAGAGGAAGGTTTTGAGCAAACATCACAAACTAGTTGCTCTGGAGGGGTTGATGATGAGGACCTTGGACCTGAGGCCAAAAGATGGAAAGGAGAGAATGAAAATGATGACTATTCTAATTCATCAGCTGGGAGTAGAACTGTTAAGGAACCTAGAGTTGTGGTTCAAACCACAAGTGAAATTGACATACTTGATGATGGATATAGGTGGAGGAAATATGGACAGAAAGTGGTCAAAGGAAACCCAAACCCAAGGAGTTACTACAAATGCGTTACCTCAGGTTGTCCAGTTAGAAAACATGTCGAGAGAGCTGCAAAAGATATGAAAGCTGTGCTAACAACCTATGAAGGGAAACATAACCACGATGTGCCTTTAGGACGAGGAAGTGCAAGCTATAACAGAACTTCTCTAAACAACACCACCAGCAATGTAACAGTACCTGCCCCTATAAGGCCTTCAGCAGTGAATAATTATTCTAACTCAGCAAGTTTCACCAATTCACTCCCTGACACCAAGCTATCAGCATCTGCAAGTCAAGACACTATTCCAATGGACATGTTGCTGAACCCTGGAAGCCTAGGATTTTCGTTTAATGACTCATTCCTTCAGTCTTTTTTTTCAAAGAACTTCTAA 1491 0.4125 MSFSFTDLLSNSNSLTMDDDPFGLEFANTFKQFQPLSLPLPSYSEFPPGFAPTTQSLNSPLFFSSQNVPASYTAESSSSMSFSMRNSSTEDQIGNKEEERYCSDFSFLTKTNHVPLFQSSTSMFEVEPVKKQDTMILNEAAKQTDFSSERTQTKSEYAITQGFSTEVASIKPEIQSNSTSVSVQFNSNNAFKSIREQRKSEDGYNWRKYGEKQVKGSEHPRSYYKCTYPNCPTKKKVERSLEGHVTEIVYRGSHNHPKPHNRKNGSQSIHHTSSSCTISGISDQSMGEEGFEQTSQTSCSGGVDDEDLGPEAKRWKGENENDDYSNSSAGSRTVKEPRVVVQTTSEIDILDDGYRWRKYGQKVVKGNPNPRSYYKCVTSGCPVRKHVERAAKDMKAVLTTYEGKHNHDVPLGRGSASYNRTSLNNTTSNVTVPAPIRPSAVNNYSNSASFTNSLPDTKLSASASQDTIPMDMLLNPGSLGFSFNDSFLQSFFSKNF 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g01167 496 ProSiteProfiles WRKY domain profile. 201 259 IPR003657 GO:0003700|GO:0006355|GO:0043565
Phco1g01167 496 MobiDBLite consensus disorder prediction 266 302 - -
Phco1g01167 496 ProSiteProfiles WRKY domain profile. 345 410 IPR003657 GO:0003700|GO:0006355|GO:0043565
Phco1g01167 496 SMART WRKY_cls 350 409 IPR003657 GO:0003700|GO:0006355|GO:0043565
Phco1g01167 496 SMART WRKY_cls 200 258 IPR003657 GO:0003700|GO:0006355|GO:0043565
Phco1g01167 496 SUPERFAMILY WRKY DNA-binding domain 196 259 IPR036576 GO:0003700|GO:0006355|GO:0043565
Phco1g01167 496 Gene3D WRKY domain 335 411 IPR036576 GO:0003700|GO:0006355|GO:0043565
Phco1g01167 496 Gene3D WRKY domain 185 260 IPR036576 GO:0003700|GO:0006355|GO:0043565
Phco1g01167 496 MobiDBLite consensus disorder prediction 306 321 - -
Phco1g01167 496 MobiDBLite consensus disorder prediction 322 337 - -
Phco1g01167 496 SUPERFAMILY WRKY DNA-binding domain 342 410 IPR036576 GO:0003700|GO:0006355|GO:0043565
Phco1g01167 496 FunFam WRKY transcription factor 33 337 403 - -
Phco1g01167 496 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 113 434 IPR044810 GO:0003700
Phco1g01167 496 MobiDBLite consensus disorder prediction 250 337 - -
Phco1g01167 496 Pfam WRKY DNA -binding domain 351 407 IPR003657 GO:0003700|GO:0006355|GO:0043565
Phco1g01167 496 Pfam WRKY DNA -binding domain 201 257 IPR003657 GO:0003700|GO:0006355|GO:0043565
Phco1g01167 496 FunFam WRKY transcription factor 187 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g01167 Phco-Chr1 16970651 16973662 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Phco1g01167 WRKY 1.5e-24 CL0274