Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g01114 ATGGAGCAAAAAGGAGGTGTGCTTATGCAACGATATGAACTAGGGAGATTATTAGGCCAAGGAACTTTTGCAAAGGTTTATCATGCTAGGAACCTCATAACTGGCATGAGTGTGGCCATAAAAATTGTTGATAAAGAGAAGATTCTGAAAGTTGGGATGATTGATCAGATTAAGCGTGAAATTTCAGTGATGAGACTAATCAGGCATCCACATGTTGCTGAGCTGTATGAGGTAATGGCCAGCAAAACCAAAATTTACTTTGTTATGGAGTATGTAAAAGGCGGTGAGCTCTTTGACAAGGTATCCAAAGGAAAGCTCAAGCAGGATGATGCTAGGAAATATTTTCAGCAATTGATCAGTGCTGTTGACTACTGCCATAGCAGAGGTGTGTGCCATCGTGATCTGAAACCAGAAAATCTTCTACTGGATGAAGATGGGAATTTGAAGGTCTCAGATTTCGGTTTAAGTGCTCTTGCCGAAACTAAGCACCAGGATGGGTTACTCCATACCACATGTGGTACCCCTGCCTATGTTGCTCCAGAAGTGATAAACAGAAGGGGTTATGATGGAGCCAAAGCTGACATATGGTCATGTGGGGTGATCTTGTATGTTCTATTAGCTGGTTTTCTTCCATTTAGAGATCCAAATCTGATGGAGATGTACAGGAAGATTGGCAAGGGAGAATTTAAATTTCCTAACTGGTTTGCACCAGATGTGCGCAGACTGCTGTCTAGAATCTTGGATCCAAACCCAAAGACCAGGATATCAATGGCCAAAATTATGGAAAGTTCCTGGTTCAAAAAGGGGTTACAGAAGCCCACCATTACTCAGAACAAAGACGAAGAACTAGCTCCTCTGGATACTGATGGAGTATTTAGTTTTTGTCAGAATGGAGATCCTATTGAACCAGCAAAAGACTCAAAACCTTGTAATCTAAATGCTTTTGACATCATCTCCTATTCCTCAGGTTTTGACTTGTCTGGTTTGTTTGAGGAGACCACTGATCGTAAGAAAGAAGCGCGATTTACCTCTGATAAGCCAGCATCTATTATCATCTCCAAGTTGGAAGAAATTTGCAAGCGCCTGCGGCTGAAACTCAAGAAGAAAGATGGAGGTTTGTTCAAGTTGGAAGGTTCCAAGGAAGGCAGAAAAGGGCCTTTGGGTATTGATGCTGAGATTTTTGAGATCACCCCAGTTTTCCATCTTGTGGAGTTAAAAAAGTCCAGTGGAGATACATTGGAGTACCAAAATCTTTTGAAGCAAGAAGTAAGGCCTGCACTTAAGGACATTGTTTGGAACTGGCAAGGAGAACAGCCACATCAACTGCAACATGGAGTGTTGCAGAAAGAGGAACAACCTTCTTATCCTGCCATATCAGAGATTGTGCCACAACCAACTGCGTAG 1404 0.4217 MEQKGGVLMQRYELGRLLGQGTFAKVYHARNLITGMSVAIKIVDKEKILKVGMIDQIKREISVMRLIRHPHVAELYEVMASKTKIYFVMEYVKGGELFDKVSKGKLKQDDARKYFQQLISAVDYCHSRGVCHRDLKPENLLLDEDGNLKVSDFGLSALAETKHQDGLLHTTCGTPAYVAPEVINRRGYDGAKADIWSCGVILYVLLAGFLPFRDPNLMEMYRKIGKGEFKFPNWFAPDVRRLLSRILDPNPKTRISMAKIMESSWFKKGLQKPTITQNKDEELAPLDTDGVFSFCQNGDPIEPAKDSKPCNLNAFDIISYSSGFDLSGLFEETTDRKKEARFTSDKPASIIISKLEEICKRLRLKLKKKDGGLFKLEGSKEGRKGPLGIDAEIFEITPVFHLVELKKSSGDTLEYQNLLKQEVRPALKDIVWNWQGEQPHQLQHGVLQKEEQPSYPAISEIVPQPTA 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g01114 467 CDD CIPK_C 313 428 - -
Phco1g01114 467 ProSitePatterns Protein kinases ATP-binding region signature. 18 41 IPR017441 GO:0005524
Phco1g01114 467 FunFam Non-specific serine/threonine protein kinase 3 91 - -
Phco1g01114 467 CDD STKc_SnRK3 11 265 - -
Phco1g01114 467 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 5 428 - -
Phco1g01114 467 Pfam Protein kinase domain 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco1g01114 467 FunFam Non-specific serine/threonine protein kinase 2 287 - -
Phco1g01114 467 ProSiteProfiles Protein kinase domain profile. 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco1g01114 467 Gene3D Kinase associated domain 1, KA1 309 433 - -
Phco1g01114 467 Gene3D Transferase(Phosphotransferase) domain 1 3 308 - -
Phco1g01114 467 SUPERFAMILY Protein kinase-like (PK-like) 8 279 IPR011009 -
Phco1g01114 467 FunFam Non-specific serine/threonine protein kinase 307 432 - -
Phco1g01114 467 SMART serkin_6 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco1g01114 467 Pfam NAF domain 309 368 IPR004041 GO:0007165
Phco1g01114 467 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672|GO:0006468
Phco1g01114 467 ProSiteProfiles NAF domain profile. 307 331 IPR018451 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g01114 Phco-Chr1 13486030 13487433 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Phco1g01114 Pkinase 1.1e-74 CL0016