Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g01113 ATGGCTCTTTTTCCTGAAACGTTCACAACCCGAAAACGACGACCCGGGGCGTCGTTTAACACTTCCAAGCTAAGCGACCTTAACCTTCTCTTCTCTCTGCTTCAACTCACGGATCAGATATGTTCTATAAACCTCAACAGCGCCGCCAATTTTCTCTTCAACCGCGCTTCATGTTCCGCTATCCGCAAAACGCAGCTCCTCGGTGTCGTTTTCGAAGACCTGATTCGCTCTTTCAACGCGAATCCCAATTCCGTTGTGTTTCCCCCCTCTCTCTTCCTCTGCCTCGAAGAAATGTACATCGTTCTGCACAAAATCAAAACGTTGATTGAAGATTTCTCCAACGGAAGCAAGTTCAATTTGCTCATGCAAATCGAAACCGTCGCCGACACCTTCCACAGGTTCACCGGAGAACTCTCCACGCTTCTCGACGTTTTCCCTCTCCGGGAACTCACCCTAAACGACGACGTGCGGGACCTCGTTCTCCTCATCAGAAAACAGTGCTCCGAATCCAGGCCTTTCATTGGAACGGAACAGATTAACCTTCGCTGCGACGTCGTTTCCGTCCTCGACCGGATCAAGAACGAGATCGTTCCTGATCAGGCGAATCTTTCGTCGATTTTCGAGAAACTGGAGATTCGTGACGCTTCAAGCTGCAGAGCGGAGATTGAGAACTTGGAGGAGGAGATTCACAACCGGAGCGAGGAGCAATCGAAGGCAGATCTCGTAGCGTTGATCGGCCTTGTTCGTTTCGCCAAGTGCGTTCTCTTCGGTGCGTCAACGCCTACGCCGAGGAGCGTGAGTCTACGACGGAGTCGGTCGTCGGAGTTCGCAGTCCCAGCGGATTACCGGTGTCCGATAAGCCTAGAGCTCATGCAAGACCCTGTCGTGGTGGCGACGGGACAGACGTACGATCGTGTATCGATCAAACTGTGGATGGATTCAGGACACAACACGTGTCCAAAAACGGGTCAAACTCTATCACACACCGACCTAATCCCCAATCGCGTCCTGAGGAACATGATAGCGACGTGGTGTCGCGAGCAGAAAATCCCCTTCGAAGTGGAAACGGTTACAGGGAAACTCAACGGCGGCGTATCCAACAAGGCCGCGTTAGAAGCCACGCGTATGACGGTGTCGTTTTTGGTGAACAAGCTCAAGGGAAACGACAACGTTCCTTTGTCCGTCGAAGTCACGAACGGTGCAGTTTACGAGCTTCGGGTTTTGGCAAAAACAGATTCAGATAGCCGAGCCTGTATCGCAGAAGCGGGGGCGATTCCGCTTTTGGTTCGGTTTCTCGATGTGGGAATGGAGAACCCGAGCCTACAGGTTAACGCCGTGACGACGATATTGAATTTGTCCATTCTGGAAGCGAACAAGACTAGGATAATGGATACTGATGGCGCGTTAAACGGCGTTGCGGAGGTTTTGCTTTCGGGTGCTTCGTGGGAGGCGAAGGCCAACGCGGCGGCGACGGTGTTTAGTTTATCGGGTGTACCCGCGCACAGGAAGAGGCTCGGTAGGAAGACAGGTGTCATTAGCGGGTTGGTGAGTTTGGCGCGGGCTGGGCCCGAGGGGGCGAGGCGAGACGCGCTAGCGGCGATACTCAACCTCGCGGCGGACAGGGAGACGGTGGCGCGCCTGGTGGAGGGGGATGCGGTGTCTATGGCTGCGGAGATCATGGCGGCGATGCCGGAGGAGGGGGTGACGATTCTGGAGGCCGTGGTCAAGAGGGGTGGGTTGGTAGCGGTGGCGGCGGCGTACGCCGGGATTAAGCGGCTGGGGGCGGTTCTCAGGGAGGGGTCGGAGAGAGCGAGGGAGAGTGCGGCGGCAACGCTGGTCACCATGTGTCGGAAGGGGGGATCGGAGGTTGTGGCTGAGCTGGCGGCGGTTCCTGGAGTGGAGAGGGTCATTTGGGAGCTCATGGCCGTGGGGAGTGCTAGGGGGCGACGGAAGGCAGCTACGCTCTTGAGGATTTTGCGGCGGTGGGCGGCGGGGCTAGATGGCGGAGAGAGTGAAGGGGTCTCAACAACCACGATGGTCACTTCCTCAACTACTTACTTAGCACCGTAA 2070 0.5599 MALFPETFTTRKRRPGASFNTSKLSDLNLLFSLLQLTDQICSINLNSAANFLFNRASCSAIRKTQLLGVVFEDLIRSFNANPNSVVFPPSLFLCLEEMYIVLHKIKTLIEDFSNGSKFNLLMQIETVADTFHRFTGELSTLLDVFPLRELTLNDDVRDLVLLIRKQCSESRPFIGTEQINLRCDVVSVLDRIKNEIVPDQANLSSIFEKLEIRDASSCRAEIENLEEEIHNRSEEQSKADLVALIGLVRFAKCVLFGASTPTPRSVSLRRSRSSEFAVPADYRCPISLELMQDPVVVATGQTYDRVSIKLWMDSGHNTCPKTGQTLSHTDLIPNRVLRNMIATWCREQKIPFEVETVTGKLNGGVSNKAALEATRMTVSFLVNKLKGNDNVPLSVEVTNGAVYELRVLAKTDSDSRACIAEAGAIPLLVRFLDVGMENPSLQVNAVTTILNLSILEANKTRIMDTDGALNGVAEVLLSGASWEAKANAAATVFSLSGVPAHRKRLGRKTGVISGLVSLARAGPEGARRDALAAILNLAADRETVARLVEGDAVSMAAEIMAAMPEEGVTILEAVVKRGGLVAVAAAYAGIKRLGAVLREGSERARESAAATLVTMCRKGGSEVVAELAAVPGVERVIWELMAVGSARGRRKAATLLRILRRWAAGLDGGESEGVSTTTMVTSSTTYLAP 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g01113 689 ProSiteProfiles U-box domain profile. 277 351 IPR003613 GO:0004842|GO:0016567
Phco1g01113 689 SMART arm_5 412 454 IPR000225 GO:0005515
Phco1g01113 689 SMART arm_5 499 539 IPR000225 GO:0005515
Phco1g01113 689 SUPERFAMILY RING/U-box 269 351 - -
Phco1g01113 689 SUPERFAMILY ARM repeat 378 659 IPR016024 -
Phco1g01113 689 FunFam RING-type E3 ubiquitin transferase 273 351 - -
Phco1g01113 689 Gene3D - 361 585 IPR011989 -
Phco1g01113 689 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 277 352 IPR013083 -
Phco1g01113 689 Coils Coil 215 235 - -
Phco1g01113 689 CDD RING-Ubox_PUB 279 331 IPR045210 -
Phco1g01113 689 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 423 467 IPR000225 GO:0005515
Phco1g01113 689 Pfam Armadillo/beta-catenin-like repeat 413 453 IPR000225 GO:0005515
Phco1g01113 689 MobiDBLite consensus disorder prediction 669 689 - -
Phco1g01113 689 SMART Ubox_2 281 344 IPR003613 GO:0004842|GO:0016567
Phco1g01113 689 Pfam U-box domain 278 349 IPR003613 GO:0004842|GO:0016567
Phco1g01113 689 PANTHER U BOX DOMAIN-CONTAINING 86 660 - -
Phco1g01113 689 MobiDBLite consensus disorder prediction 671 689 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g01113 Phco-Chr1 13388868 13390937 Transposed