Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g01101 ATGAGTTGCAGAGAAAGGAACAAAGGGGAAAGAGAAGAGAAGGAATATGAGAACAGTTCAGGTGGATTGGAATCAAAATCAGTGAGGCAAAGCATTGGTTCGATAGAAGATGAACCGCTAACAATTGATGAAAGTCTTCTGATTGACCCCAAGCTATTGTTTATTGGGTCAAAAATTGGCGAGGGAGCTCATGGGAGAGTTTATGAAGGAAGGTACAGAGAACGGATTGTTGCTATAAAAGTTCTGCATCGTGGGAGTACTTTGGAAGAAAGAGTTTCACGGGAGAATCGTTTTGCTCGGGAAGTTAATATGATGTCTCGTGTCCACCATGAGAATCTTGTAAAGTTTATTGGAGCTTGTAAGGATCCTCTGATGGTGATTGTTACAGAGATGTTACCCGGGTTGTCACTGCGAAGATATCTGATCACCATACGCCCTAAACAATTGGAGCTTTATGTGGCTATAAAGTTTGCCCTTGATATTGCTTTAGCCATGAGTTGGTTACATGCCAATGGCATCATACATAGAGATCTGAAGCCTGACAATCTGCTGCTCACAGAAAACCAGGAGTCAGTTAAACTTGCTGATTTTGGTCTGGCAAGAGAAGAATCTGTGACTGAGATGATGACTGCAGAAACTGGAACTTACCGTTGGATGGCACCCGAGTTGTACAGTACAGTGACATTGCGTCAAGGGGAGAAAAAGCATTACAACAATAAGGTTGATGTCTACAGCTTTGGAATTGTTTTGTGGGAGCTACTAACAAATCGCATGCCTTTTGAAGGGATGTCCAATTTACAGGCTGCTTATGCGGCTGCATTTAAGCAAGAGAGGCCTAGCCTTCCTGAAGACATATCTCCTGATCTTGCCTTTATCATACAATCATGTTGGGTGGAAGATCCTAACATGAGACCAAGCTTCAGTCAGATTATCCGCATGCTCAATGAGTTCATCCTCACGCTCCAACCCCCACCGCTTTCAGCACTGCCTGAACCTGACGACGAACCAGAGGCTGTGACAAGTAATGGCGCCATAACTGACTTTTCGACCCGAAGTAAAGTAAAGTTTTCTTTTATTCGCCACCTTTTTTCTTCAAAGAGGACCAGAAGCTAA 1113 0.4349 MSCRERNKGEREEKEYENSSGGLESKSVRQSIGSIEDEPLTIDESLLIDPKLLFIGSKIGEGAHGRVYEGRYRERIVAIKVLHRGSTLEERVSRENRFAREVNMMSRVHHENLVKFIGACKDPLMVIVTEMLPGLSLRRYLITIRPKQLELYVAIKFALDIALAMSWLHANGIIHRDLKPDNLLLTENQESVKLADFGLAREESVTEMMTAETGTYRWMAPELYSTVTLRQGEKKHYNNKVDVYSFGIVLWELLTNRMPFEGMSNLQAAYAAAFKQERPSLPEDISPDLAFIIQSCWVEDPNMRPSFSQIIRMLNEFILTLQPPPLSALPEPDDEPEAVTSNGAITDFSTRSKVKFSFIRHLFSSKRTRS 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g01101 370 MobiDBLite consensus disorder prediction 1 20 - -
Phco1g01101 370 SUPERFAMILY Protein kinase-like (PK-like) 48 331 IPR011009 -
Phco1g01101 370 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 48 316 - -
Phco1g01101 370 Pfam Protein tyrosine and serine/threonine kinase 55 314 IPR001245 GO:0004672|GO:0006468
Phco1g01101 370 MobiDBLite consensus disorder prediction 325 344 - -
Phco1g01101 370 Gene3D Transferase(Phosphotransferase) domain 1 137 323 - -
Phco1g01101 370 FunFam Kinase suppressor of Ras 1 42 132 - -
Phco1g01101 370 ProSitePatterns Serine/Threonine protein kinases active-site signature. 173 185 IPR008271 GO:0004672|GO:0006468
Phco1g01101 370 ProSitePatterns Protein kinases ATP-binding region signature. 59 80 IPR017441 GO:0005524
Phco1g01101 370 SMART serkin_6 53 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco1g01101 370 Gene3D Phosphorylase Kinase; domain 1 42 132 - -
Phco1g01101 370 CDD STKc_MAP3K-like 59 314 - -
Phco1g01101 370 MobiDBLite consensus disorder prediction 1 30 - -
Phco1g01101 370 ProSiteProfiles Protein kinase domain profile. 53 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g01101 Phco-Chr1 13204826 13214367 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Phco1g01101 PK_Tyr_Ser-Thr 3.9e-60 CL0016