Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Phco1g01097 | ATGGCTTTGATATTGGATCAACAATCAAACTTCAAGCACTTTTGTAAAATTTGCAAGAAAGGTTTTGGTTGTGGAAGAGCTTTGGGAGGACACATGAGGGCTCATGGCATAGGAGATGAAGGTGGTCACATGGATGATGATGATCAAGCAAGTGATTGGGAAGATAGGTTGGGTGGCAATGTTCCACCAAGCAACAAACGCATGTATGCTTTAAGAACAAATCCTAATAGGCTAAAGAGTTGTAGGGTATGTGAGAATTGTGGCAAGGAGTTTTTGTCTTGGAAATCTTTCCTTGAACATGGAAAATGCACCTCCGAGGATGCTGACTCCTTTGTCTCCTCTCCGGGCTCCGACGCGGATGACGGTGGCATCGGCGGCGACCGGAGAGGATGTGGGTGGTCTAAAAGGAAAAGGTCTCTGAGAACTAAGGTTGGTAGCTTCAATTACAATTGCCCATCAAGCGAGGAAGAAGACCTAGCAAATTGTTTAATGATGTTGTCCAATGCCATTGTAGATCCTCTTGCAGCTGAGCCTGAAGAATCATGTGCATCCGCTAGCAAGGAGGAAGAACAACGACGAAATCCCATGAATTTCATTGCACCATTGTCGTACAAAGTTAATAACAATAACAATATTCACAACATTAACAACCTTGTTGATAACAAGGCCAAAGGGATTTCTAAGGGTTTGTTTGAATGCAAAGCATGTAAGAAGGTTTTCAATTCCCACCAAGCATTGGGTGGCCATAGAGCAAGCCACAAAAAGGTTAAGGGTTGTTTTGCTGCAAGACTAGACAACCTTGACGACAATCTCATCACCGATGATGATGTAATCACACACGAAGAACTCTTTGCTACAAAATCAAACTCCACCCTCCAATTCGACCATGGCTCCAACCCCACATTGGCCTCTTCCTCCAAAAGGAAATCCAAAGTGCATGAATGTTCCATTTGCCACAGAAGTTTCTCTTCAGGACAAGCCCTTGGGGGACACAAAAGGTGTCATTGGATCACATCAAATGCACCTGACACCTCCACATTAACAAGATTTCAACAATTTCACGACCACTTGGATCAAATACCCAAGTTTGACACCTCTTCTGAACCTCTTGATCTCAAGTTAGACCTTAACCTTCCTGCACCTTCCAATGACCTTGCAAGAAGGAATGTTTCTACAGAAATTTACTTGCAGCCTTGGGTTACATCAAAGGATGTTAAAGATGATAACAATAGCCAGTGTCAAAGTCTCCATCACAATACCAACAATGTTGATATTGACAACAATGATGAGGACAAAAACACTAACAACTCAATGCAAAATTTGGATAACGAAGCTGATAATAAGATCAAGTTGGCCAAACTAAGTGAGCTAAAGGACATGAACATTGGAGGCAGTTCTTCGCCATGGTTGCAGGTGGGAATCGGTTCAGCTGTTACTGACGTAACAACTGATAACTCCTGA | 1461 | 0.4278 | MALILDQQSNFKHFCKICKKGFGCGRALGGHMRAHGIGDEGGHMDDDDQASDWEDRLGGNVPPSNKRMYALRTNPNRLKSCRVCENCGKEFLSWKSFLEHGKCTSEDADSFVSSPGSDADDGGIGGDRRGCGWSKRKRSLRTKVGSFNYNCPSSEEEDLANCLMMLSNAIVDPLAAEPEESCASASKEEEQRRNPMNFIAPLSYKVNNNNNIHNINNLVDNKAKGISKGLFECKACKKVFNSHQALGGHRASHKKVKGCFAARLDNLDDNLITDDDVITHEELFATKSNSTLQFDHGSNPTLASSSKRKSKVHECSICHRSFSSGQALGGHKRCHWITSNAPDTSTLTRFQQFHDHLDQIPKFDTSSEPLDLKLDLNLPAPSNDLARRNVSTEIYLQPWVTSKDVKDDNNSQCQSLHHNTNNVDIDNNDEDKNTNNSMQNLDNEADNKIKLAKLSELKDMNIGGSSSPWLQVGIGSAVTDVTTDNS | 486 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Phco1g01097 | 486 | MobiDBLite | consensus disorder prediction | 39 | 54 | - | - | |
| Phco1g01097 | 486 | Gene3D | Classic Zinc Finger | 11 | 103 | - | - | |
| Phco1g01097 | 486 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 231 | 258 | IPR013087 | - | |
| Phco1g01097 | 486 | Gene3D | Classic Zinc Finger | 228 | 335 | - | - | |
| Phco1g01097 | 486 | MobiDBLite | consensus disorder prediction | 109 | 128 | - | - | |
| Phco1g01097 | 486 | MobiDBLite | consensus disorder prediction | 39 | 59 | - | - | |
| Phco1g01097 | 486 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 233 | 253 | IPR013087 | - | |
| Phco1g01097 | 486 | SUPERFAMILY | beta-beta-alpha zinc fingers | 13 | 101 | IPR036236 | - | |
| Phco1g01097 | 486 | MobiDBLite | consensus disorder prediction | 404 | 422 | - | - | |
| Phco1g01097 | 486 | MobiDBLite | consensus disorder prediction | 404 | 444 | - | - | |
| Phco1g01097 | 486 | SUPERFAMILY | beta-beta-alpha zinc fingers | 230 | 335 | IPR036236 | - | |
| Phco1g01097 | 486 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 313 | 335 | IPR013087 | - | |
| Phco1g01097 | 486 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 15 | 35 | IPR013087 | - | |
| Phco1g01097 | 486 | Pfam | C2H2-type zinc finger | 231 | 255 | - | - | |
| Phco1g01097 | 486 | Pfam | C2H2-type zinc finger | 13 | 35 | - | - | |
| Phco1g01097 | 486 | Pfam | C2H2-type zinc finger | 312 | 337 | - | - | |
| Phco1g01097 | 486 | SMART | c2h2final6 | 231 | 253 | IPR013087 | - | |
| Phco1g01097 | 486 | SMART | c2h2final6 | 13 | 35 | IPR013087 | - | |
| Phco1g01097 | 486 | SMART | c2h2final6 | 313 | 335 | IPR013087 | - | |
| Phco1g01097 | 486 | PANTHER | OS02G0659100 PROTEIN | 2 | 479 | - | - | |
| Phco1g01097 | 486 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 315 | 335 | IPR013087 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Phco1g01097 | Phco-Chr1 | 13126315 | 13127775 | Proximal |
Transcription factors information