Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Phco1g01094 | ATGGAGAAGCACAAGTGCAAGCTTTGCTTAAGGAGTTTCGCCAATGGAAGAGCTTTAGGAGGTCACATGAGGTCTCACATGATGAACCTACCGGTTCCTCCGAAAGAGAGCGAGTTCGTCCCGGTTCAACTCAGTTTTGAGGCCGATTCATCCCCTTCTCAATCCTCTTCTTCCTTCTACGGTCTCAGAGAGAACCCCAAAAAAAGTTTCCGTTTTGCAGATCCTGAATTCTCGTTCGCAGCAGAAACGGGCTCCGTGATCCTCCAAGATAGAGAGAGCGAGACCGAGTCATCCAAGAACCCAACTCGAAAACGATCCAAGAGAGCTTGGCAACTCGGAGAACCCCTGAAAAAAATGAAACTCTTTGAAAATAATAGCAAGAACGAATCTGCAAGTTCTGCTTCCGATACCACCACGGAGGAAGCCGTGGCATTTTGTCTAATGATGCTGTCTCGTGACAGATGGAAGAAGTATGATGATCATAAAAACATACAACAGTATGATGATGAGATTGAAGATGATGCTGACAACGATGATGAAGATGAAGAAGAGGATGATGAAGAAAAGGATGGTTTTGAATTCGAGGAGATGAAATCTGTTAAGAGGAGTAACAAGGTGCGAGGGAGGTACAAATGCGAAACGTGTGATAAGGTGTTTCGATCTTACCAAGCTCTTGGTGGGCACAGAGCAAGTCACAAGAAAATGAAGTTAAACTCTGAAACGGAGTTTCAGAAGACTGAACCTGAATTGGAGCATGTTGCTGTGGCGGAGAAGAAAGTCCACGAATGCCCCGTTTGCTCTAGAGTCTTTGGTTCGGGTCAAGCCCTCGGTGGACACAAGAGAACACATGTTATAGGTTCTTCTGCAACTACTACCACCGCAACTGTCAGAACTTCTGCAAATGTCAGAACTTCTGCAACTGTTTCGGTTGGAGCTTCTGCTAGAGTTGGAGACAGTTTGATAGATCTTAATCTCCCTGCTCCAATGGATGATGATGAAGACATTAGCCAGTTCGATCACTCCGCTCTTTCGGATGCAGAGTTTGTCAAACAGTGA | 1056 | 0.4545 | MEKHKCKLCLRSFANGRALGGHMRSHMMNLPVPPKESEFVPVQLSFEADSSPSQSSSSFYGLRENPKKSFRFADPEFSFAAETGSVILQDRESETESSKNPTRKRSKRAWQLGEPLKKMKLFENNSKNESASSASDTTTEEAVAFCLMMLSRDRWKKYDDHKNIQQYDDEIEDDADNDDEDEEEDDEEKDGFEFEEMKSVKRSNKVRGRYKCETCDKVFRSYQALGGHRASHKKMKLNSETEFQKTEPELEHVAVAEKKVHECPVCSRVFGSGQALGGHKRTHVIGSSATTTTATVRTSANVRTSATVSVGASARVGDSLIDLNLPAPMDDDEDISQFDHSALSDAEFVKQ | 351 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Phco1g01094 | 351 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 6 | 26 | IPR013087 | - | |
| Phco1g01094 | 351 | PANTHER | ZINC FINGER PROTEIN ZAT1-RELATED | 1 | 350 | IPR044303 | GO:0006355 | |
| Phco1g01094 | 351 | MobiDBLite | consensus disorder prediction | 169 | 192 | - | - | |
| Phco1g01094 | 351 | MobiDBLite | consensus disorder prediction | 92 | 124 | - | - | |
| Phco1g01094 | 351 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 4 | 31 | IPR013087 | - | |
| Phco1g01094 | 351 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 261 | 283 | IPR013087 | - | |
| Phco1g01094 | 351 | SUPERFAMILY | beta-beta-alpha zinc fingers | 209 | 283 | IPR036236 | - | |
| Phco1g01094 | 351 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 263 | 283 | IPR013087 | - | |
| Phco1g01094 | 351 | Pfam | C2H2-type zinc finger | 4 | 27 | - | - | |
| Phco1g01094 | 351 | Pfam | C2H2-type zinc finger | 260 | 283 | - | - | |
| Phco1g01094 | 351 | Pfam | C2H2-type zinc finger | 209 | 234 | - | - | |
| Phco1g01094 | 351 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 212 | 232 | IPR013087 | - | |
| Phco1g01094 | 351 | MobiDBLite | consensus disorder prediction | 84 | 138 | - | - | |
| Phco1g01094 | 351 | SMART | c2h2final6 | 4 | 26 | IPR013087 | - | |
| Phco1g01094 | 351 | SMART | c2h2final6 | 261 | 283 | IPR013087 | - | |
| Phco1g01094 | 351 | SMART | c2h2final6 | 210 | 232 | IPR013087 | - | |
| Phco1g01094 | 351 | MobiDBLite | consensus disorder prediction | 166 | 194 | - | - | |
| Phco1g01094 | 351 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 210 | 237 | IPR013087 | - | |
| Phco1g01094 | 351 | Gene3D | Classic Zinc Finger | 207 | 283 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Phco1g01094 | Phco-Chr1 | 13078531 | 13079586 | Proximal |
Transcription factors information