Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g01085 ATGAGCCAACGTGTCCCTAGCTGTGATGTGGACGACAACACCATTCCCACACCCACAAAGTTCCCTCTTCTTTCCACCTCCAATTTCACAGCCCATGAAGTCCCAATGTTGGGCTACAAAGTGGCATGCAAAAAGGGACAACCTTCGACCCATGAAGACAGCCCTGGGAGGAACCAAGCAATATGGGACGTACCTCGCACAAGTGGAACCTTGGAGTCCATAGTGAACCATCGTATCGGCAAAAACTGCCACAAGTCAGTTACTAAGGACGCCTTAGTGCCCTGTTTCCCCAAACAGAGCACAATGTTTGGCGCGTGCAAGAAGGGTTACTCCAGGCGCGTGGAGTCTGGAGCTGGGGTGGTGGCGCGTGGTCCCACAACGCATGAGTTGAGTGGCGGCAAGGACTCGAGTGTGAGTGGTAGTGACACTTATCCAAGGGAGTTGAGCGTGACTTTCAATTCAGCCACCATGGGTTGCCCGGAAAACACCTGGAGCTCTGGTAAGCAGTGTACGGAGACCACTGCCAACGACGACCGTGATTCCGTAAGCCACCGTAGGTCGCAGAGTGAGGCAGGAGAAGAGGATTGCAAGAGAAGTGGAGTTGACAGATCTTGTGAATCCAACAAAAGAATAAAAGCTTCAGCTGTACACAACCAATCTGAAAGGAGAAGGAGAGATAAGATCAACCAAAGAATGAAGGAATTGCAAAAACTGGTCCCCAATTCCAGCAAGACCGATAAAGCTTCCATGCTGGATGAGGTTATCCAATATATGAAGCAATTGCAAGCACATTTGCAGATGATGAATTGGATGAAAATGTACTCTTCGATTATGCTGCCAATTGCCATGCAACAGCAACAACTTAAAATGTCGATGATGATGACTCAAATGGGCATTGGAATGAGAATGAGTAAGGAAATGGGTATGAATATGAACAACATCAACATTCCCTCCATTCCTCCCATGCTCCACCTTCCTCCTTTCATGCCTATGGCTTCCTGTGGTGATCGACTACTAGGAGAACCAGCAAAGTCAGTGACAGTGGATGCATACAGTAAGATGGCTGCTCTGTATAATCAGATGTATAATTCTCCAGATTCTACCTCCAAGAAATGA 1116 0.4785 MSQRVPSCDVDDNTIPTPTKFPLLSTSNFTAHEVPMLGYKVACKKGQPSTHEDSPGRNQAIWDVPRTSGTLESIVNHRIGKNCHKSVTKDALVPCFPKQSTMFGACKKGYSRRVESGAGVVARGPTTHELSGGKDSSVSGSDTYPRELSVTFNSATMGCPENTWSSGKQCTETTANDDRDSVSHRRSQSEAGEEDCKRSGVDRSCESNKRIKASAVHNQSERRRRDKINQRMKELQKLVPNSSKTDKASMLDEVIQYMKQLQAHLQMMNWMKMYSSIMLPIAMQQQQLKMSMMMTQMGIGMRMSKEMGMNMNNINIPSIPPMLHLPPFMPMASCGDRLLGEPAKSVTVDAYSKMAALYNQMYNSPDSTSKK 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g01085 371 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 212 261 IPR011598 GO:0046983
Phco1g01085 371 MobiDBLite consensus disorder prediction 173 201 - -
Phco1g01085 371 MobiDBLite consensus disorder prediction 123 145 - -
Phco1g01085 371 Coils Coil 218 238 - -
Phco1g01085 371 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 99 348 IPR031066 -
Phco1g01085 371 CDD bHLH_AtPIF_like 212 274 IPR047265 -
Phco1g01085 371 MobiDBLite consensus disorder prediction 163 201 - -
Phco1g01085 371 SMART finulus 218 267 IPR011598 GO:0046983
Phco1g01085 371 MobiDBLite consensus disorder prediction 130 145 - -
Phco1g01085 371 Gene3D - 207 272 IPR036638 GO:0046983
Phco1g01085 371 FunFam transcription factor UNE10 isoform X1 207 272 - -
Phco1g01085 371 Pfam Helix-loop-helix DNA-binding domain 216 262 IPR011598 GO:0046983
Phco1g01085 371 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 214 277 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g01085 Phco-Chr1 12828273 12833062 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phco1g01085 HLH 1.2e-14 No_clan