Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g01048 ATGAAGGCCATGCCCTTGCCTTTTGAGGAATTTCAAGGGAAGGGAGTGTTGGATTTCTCTTCGGCCTCAGATTCATTTTCACTGCTTTTGCATCATCCACAACCAAAGTGGACCATAGACAAAGAGGATTATTGCTATGTGGGCAGCACTGAGCCCACCTCAGTTCTCGACTCCAGAAGAAGCCCAAGCCCTCCCACTTCCTCCTCTACAATGTCCTCTTCTCTTGGCAGCAACAGCACCAGCAAGGGTGGCAGTGGCACTTCTGCCAACACCACCACCACCACTGGTGCTGCAGCCCCTACACCCTCTGACAACAACAACCCTCCTCCGGATTCCAGCCCTGAAAAATGTGGCATCAGGATGGAGGACTGGGAGGGTCAAGATCAATCCATTTTCAGGCTAATCATGGGGGATGTTGAAGACCCTTCTGCTGGATTGAGCAAGCTCTTGCAAAGCACTGCCTGTGGCTCTCAAAGTATTGATTTCAATGCAGGCTTTGGTGTTGTGGATCAAGGTTTGAATATGGTGAGTGGTGGTATTGACCCTTCAGGGAATTACCCCGCTGGTTTCCCTTTCATTGCTGAGAATATTGATGGCCACAATGGCAAGCCTGGCTCTGTGGCTGGCCAGGTTTCAGAATCTGTTGTTTTCTCTGCTAATAATCCTCTTATGGTGTCATCATCTGTGTCTCCTGGTGTGTTCACTTCTCAGCAGCAGCATGAGTTTGGAGTGGTGGATGAGAAGCCTCAGGTTATCAACCCCCAGTTTATGTTAAACCAGAACCAAGTTCAGTTCTCAGAGAACCCTTCTTTCTTTGTGCCATTGATGTATCCCCAGGTTCAGGAGCAGCAGGTTTTTCCTCAGCATCAAGCAAAGCGCCCTCTCTTTGAATCAATCGGGCACAATTATCAGGCTCCAAGGATGCCCCTTTTGGATTCAGGGCAAGAGGTGTTTGGCAGGAGGCAGCAAACACAGCTTCCTTTATTTCCTCACCATATGCAACAACAACAACAACAATCAATTGTTATGCCATCTGCTAAACAGCAGAAGGTGAGTTCCGCCGGAGACGATGCAAGCCACCAGCTTCAGCAGGCTATATTTGATCAGTTATACAAAACTGCTGAGCTGATAGAAGCTGGTAATCCGGTTCATGCGCAAGGGATATTGGCGCGGCTCAATCACCAGCTCTCCCCAATTGGTAAGCCTTTTCAGAGGGCTGCTTTCTACATGAAGGAGGCCTTGATGTCACTGCTTCATTCAAATGCTCACAGTTTCATGGCTTTCTCACCAATTAGTTTCATATTCAAAATTGGAGCTTACAAGTCCTTTTCTGAGATATCACCTGTTCTTCAGTTTTCCAATTTTACTTCTAACCAAGCCCTTATTGAAGCTGTCGAAAGGTTTGACCGAATTCATGTCATTGATTTTGATATTGGGTTTGGAGTGCAGTGGTCATCTTTTATGCAAGAAATTGCCTTGAGAAGTAGTGCTGCACCTTCCCTCAAAGTCACTGCCATTGTGTCACCCTCCACTTGTGATGAGGTTGAACTCAATTTTACCAAAGAAAATTTGATGCAATACGCTAAGGACATTAACGTGTCTTTTGAGTTCAGTGTCTTGAACATCGAATCATTGCACTCTTCTTCTTCTCCACTGGTTGGCCAATTCTTTGATAATGAGGCCATTGCTGTGAATATGCCAGTTTCAAGTTTCACAAACAATCCATCATTGTTCCCTTCAGCTCTTCACTTTGTAAAGCAGCTGAGGCCAAAGGTTGTGGTGACATTGGACAGAATTTGTGATCGAATTGACGTGTCACTTCCCACAAAAGCAGTCCACGTTCTCCAATGTTATTCCGCCTTGCTGGACTCCCTGGACGCTGTGAATGTGAATCTTGATGTCCTTCAAAAGATTGAGAGGCATTTCATTCAACCAGTCATGAAGAAAATTATTCTTGGCCACCACCATTCTCAAGAGAAACTACCTCCATGGAGGAACCTCCTTCTACAATCTGGATTTTCTCCATTCACATTCAGCAACTTCACAGAAGCTCAAGCTGAGTGTTTAGTTCAGAGGGCACCTGTGAGGGGATTTCACGTGGAAAGAAAGCCTTCATCTCTTGTTCTGTGCTGGCAGAGGAAAGAACTCATCTCAGTTTCTACTTGGAGAAGCTGA 2175 0.4598 MKAMPLPFEEFQGKGVLDFSSASDSFSLLLHHPQPKWTIDKEDYCYVGSTEPTSVLDSRRSPSPPTSSSTMSSSLGSNSTSKGGSGTSANTTTTTGAAAPTPSDNNNPPPDSSPEKCGIRMEDWEGQDQSIFRLIMGDVEDPSAGLSKLLQSTACGSQSIDFNAGFGVVDQGLNMVSGGIDPSGNYPAGFPFIAENIDGHNGKPGSVAGQVSESVVFSANNPLMVSSSVSPGVFTSQQQHEFGVVDEKPQVINPQFMLNQNQVQFSENPSFFVPLMYPQVQEQQVFPQHQAKRPLFESIGHNYQAPRMPLLDSGQEVFGRRQQTQLPLFPHHMQQQQQQSIVMPSAKQQKVSSAGDDASHQLQQAIFDQLYKTAELIEAGNPVHAQGILARLNHQLSPIGKPFQRAAFYMKEALMSLLHSNAHSFMAFSPISFIFKIGAYKSFSEISPVLQFSNFTSNQALIEAVERFDRIHVIDFDIGFGVQWSSFMQEIALRSSAAPSLKVTAIVSPSTCDEVELNFTKENLMQYAKDINVSFEFSVLNIESLHSSSSPLVGQFFDNEAIAVNMPVSSFTNNPSLFPSALHFVKQLRPKVVVTLDRICDRIDVSLPTKAVHVLQCYSALLDSLDAVNVNLDVLQKIERHFIQPVMKKIILGHHHSQEKLPPWRNLLLQSGFSPFTFSNFTEAQAECLVQRAPVRGFHVERKPSSLVLCWQRKELISVSTWRS 724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g01048 724 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 337 719 IPR005202 -
Phco1g01048 724 Pfam GRAS domain family 368 723 IPR005202 -
Phco1g01048 724 ProSiteProfiles GRAS family profile. 357 723 IPR005202 -
Phco1g01048 724 MobiDBLite consensus disorder prediction 51 102 - -
Phco1g01048 724 MobiDBLite consensus disorder prediction 51 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g01048 Phco-Chr1 11956736 11958910 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Phco1g01048 GRAS 2.1e-89 CL0063
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g01772 3 40109764 40116873 Phco1g01048 1 11956736 11958910 PCT