Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g01006 ATGTCCTCCTCATCCACTTCCTTTTCACCGGACCAACACCTCTCTCCCTCCGACCAGCTCTGCTATGTCCATTGCAATTTCTGTGACACTGTCCTCGCGGTGAGTGTTCCTTGCTCCAGTTTGTTTAAGACTGTCACTGTGAGATGTGGTCATTGCACCAACCTTCTCTCAGTCAACATGCGTGGCCTGCTTCTTCCTTCAGCTAATCAGATTCACCTTGGTCACACCTTTTTCACTCCTCAAAATCTTCTGGAGGAGATTCGTAATGCACCTTCAACAAACATGGTGATGAATCAGATGCCAAACCCTAATGATTTGGTCATGCGCACCATGCGAGGAGGGCCAGAAGAAACCCCTAAGCCTCCATCTGCTAACAGACCTCCAGAAAAGAGACAGAGAGTTCCATCTGCTTACAATCGCTTCATCAAGGATGAGATCCAACGTATCAAAGCTGGGAACCCTGATATAAGTCACAGAGAGGCCTTCAGTGCAGCTGCAAAGAATTGGGCCCATTTTCCACACATTCATTTCGGACTTATGCCTGATCATCAACCCGTGAAGAAAGCTAATGTTCGTCAGGAAGCAGAGGATGTTCTTATCAAAGATGGGTTTTTTGCACCAGCTAATGTAGGTGTCTCTCCCTTCTAG 648 0.4722 MSSSSTSFSPDQHLSPSDQLCYVHCNFCDTVLAVSVPCSSLFKTVTVRCGHCTNLLSVNMRGLLLPSANQIHLGHTFFTPQNLLEEIRNAPSTNMVMNQMPNPNDLVMRTMRGGPEETPKPPSANRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLMPDHQPVKKANVRQEAEDVLIKDGFFAPANVGVSPF 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g01006 215 MobiDBLite consensus disorder prediction 110 134 - -
Phco1g01006 215 CDD HMG-box_SF 133 169 - -
Phco1g01006 215 SUPERFAMILY HMG-box 120 173 IPR036910 -
Phco1g01006 215 Gene3D High mobility group box domain 116 197 IPR036910 -
Phco1g01006 215 PANTHER PROTEIN YABBY 6-RELATED 1 191 IPR006780 GO:0007275
Phco1g01006 215 FunFam Axial regulator YABBY 124 196 - -
Phco1g01006 215 Pfam YABBY protein 16 179 IPR006780 GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g01006 Phco-Chr1 10493382 10495709 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Phco1g01006 YABBY 7.9e-74 CL0114
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco1g01006 1 10493382 10495709 Phco1g01006 1 10493382 10495709 ECH